Name: Thermus oshimai JL-2
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 139853

Type strain:

Species: Thermus oshimai

Strain Designation: JL-2

Culture col. no.: DSM 103965

Strain history: <- B. P. Hedlund, School Life Sci., Univ. Nevada, Las Vegas, USA; JL-2 <- J Lam

NCBI tax ID(s): 56957 (species)

SI-ID 405554

DSM 103965

Special Collections

DSMZ

Other strains from Thermus oshimai

Section

Thermus oshimai JL-2 is a Gram-negative bacterium that was isolated from Great Boiling Spring, Gerlach.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Thermales*
	Family	*Thermaceae*
	Genus	*Thermus*
	Species	**Thermus oshimai**
	Full Scientific Name (LPSN)	Thermus oshimai Williams et al. 1996

Information on culture and growth conditions Culture and growth conditions

[Ref.: #42461]

Culture medium

CASTENHOLZ MEDIUM (DSMZ Medium 86)

[Ref.: #42461]

Culture medium growth

[Ref.: #42461]

Culture medium link

Medium recipe at MediaDive

[Ref.: #42461]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #42461]			growth	75 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #42461]	Sample type/isolated from	Great Boiling Spring, Gerlach
[Ref.: #42461]	Geographic location (country and/or sea, region)	Nevada
[Ref.: #42461]	Country	USA
[Ref.: #42461]	Country ISO 3 Code	USA
[Ref.: #42461]	Continent	North America
* marker position based on {}

Isolation sources categories

#Condition	#Thermophilic (>45°C)	-
#Environmental	#Aquatic	#Thermal spring

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #42461]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermus oshimai JL-2	GCA_000309885	complete	GenBank ENA	751945 tax ID	*
[Ref.: #66792]	Thermus oshimai JL-2	751945.13	plasmid	PATRIC	751945 tax ID	*
[Ref.: #66792]	Thermus oshimai JL-2	751945.3	complete	PATRIC	751945 tax ID	*
[Ref.: #66792]	Thermus oshimai JL-2	751945.14	plasmid	PATRIC	751945 tax ID	*
[Ref.: #66792]	Thermus oshimai JL-2	2508501045	complete	JGI IMG/M	751945 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermus oshimai JL-2 JL-2 NCBI: GCA_000309885.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	72.841	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	84.51	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	75.715	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	71.342	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	75.69	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	78.8	no

Availability in culture collections External links

[Ref.: #42461]

Culture collection no.

DSM 103965

[Ref.: #96294]

SI-ID 405554

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	A Novel Gene Cluster Is Involved in the Degradation of Lignin-Derived Monoaromatics in Thermus oshimai JL-2.	Chakraborty J, Suzuki-Minakuchi C, Tomita T, Okada K, Nojiri H	Appl Environ Microbiol	10.1128/AEM.01589-20	2021	*
	Thermus oshimai JL-2 and T. thermophilus JL-18 genome analysis illuminates pathways for carbon, nitrogen, and sulfur cycling.	Murugapiran SK, Huntemann M, Wei CL, Han J, Detter JC, Han C, Erkkila TH, Teshima H, Chen A, Kyrpides N, Mavrommatis K, Markowitz V, Szeto E, Ivanova N, Pagani I, Pati A, Goodwin L, Peters L, Pitluck S, Lam J, McDonald AI, Dodsworth JA, Woyke T, Hedlund BP	Stand Genomic Sci	10.4056/sigs.3667269	2013	*
	Whole Genome Sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, Incomplete Denitrifiers from the United States Great Basin.	Murugapiran SK, Huntemann M, Wei CL, Han J, Detter JC, Han CS, Erkkila TH, Teshima H, Chen A, Kyrpides N, Mavrommatis K, Markowitz V, Szeto E, Ivanova N, Pagani I, Lam J, McDonald AI, Dodsworth JA, Pati A, Goodwin L, Peters L, Pitluck S, Woyke T, Hedlund BP	Genome Announc	10.1128/genomeA.00106-12	2013	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42461

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103965

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#96294

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405554.1 )

* These data were automatically processed and therefore are not curated

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Thermus oshimai JL-2 JL-2

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