Name: Thermus scotoductus SE-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16724

Type strain:

Species: Thermus scotoductus

Strain Designation: SE-1

Culture col. no.: DSM 8553, ATCC 51532, NCIMB 13336, JCM 11601, BCRC 17424, CCM 4465, NBRC 110748

Strain history: NCIMB 13336 <-- DSM 8553 <-- J. K. Kristjánsson SE-1.

NCBI tax ID(s): 1123391 (strain), 37636 (species)

SI-ID 43037

ATCC 51532, DSM 8553, NCIMB 13336, CCM 4465, JCM 11601, BCRC 17424, CCRC 17424

Other strains from Thermus scotoductus

T. scotoductus VI-7a, DSM 12093
T. scotoductus KI2, DSM 26573

Section

Thermus scotoductus SE-1 is a thermophilic, Gram-negative bacterium that was isolated from hot tap water.

Gram-negative
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Thermales*
	Family	*Thermaceae*
	Genus	*Thermus*
	Species	**Thermus scotoductus**
	Full Scientific Name (LPSN)	Thermus scotoductus Kristjansson et al. 1994

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.849

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3295]

Culture medium

THERMUS 162 MEDIUM (DSMZ Medium 878)

[Ref.: #3295]

Culture medium growth

[Ref.: #3295]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3295]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3295]			growth	65 °C
[Ref.: #67770]			growth	65 °C

[Ref.: #3295]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %100

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.92

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3295]	Sample type/isolated from	hot tap water
[Ref.: #3295]	Geographic location (country and/or sea, region)	Town of Selfoss
[Ref.: #3295]	Country	Iceland
[Ref.: #3295]	Country ISO 3 Code	ISL
[Ref.: #3295]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Hot tap-water in Selfoss
[Ref.: #67770]	Country	Iceland
[Ref.: #67770]	Country ISO 3 Code	ISL
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Freshwater
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3295]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Thermus scotoductus 16S ribosomal RNA gene, complete sequence	AF032127	1469	ENA	37636 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thermus scotoductus DSM 8553	GCA_000381045	scaffold	GenBank	1123391 tax ID
[Ref.: #66792]	Thermus scotoductus DSM 8553	1123391.3	wgs	PATRIC	1123391 tax ID	*
[Ref.: #66792]	Thermus scotoductus DSM 8553	2518645614	draft	JGI IMG/M	1123391 tax ID	*

[Ref.: #3295]	GC-content	64.5 mol%
[Ref.: #67770]	GC-content	64.5 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermus scotoductus DSM 8553 DSM 8553 NCBI: GCA_000381045.1
[Ref.: #69481]	spore-forming	no	88	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermus scotoductus DSM 8553 PATRIC: 1123391.3
[Ref.: #69480]	motile	no	87.088	no
[Ref.: #69480]	flagellated	no	97.137	no
[Ref.: #69480]	gram-positive	no	93.038	no
[Ref.: #69480]	anaerobic	no	93.64	no
[Ref.: #69480]	aerobic	yes	74.698	no
[Ref.: #69480]	halophile	no	85.757	no
[Ref.: #69480]	spore-forming	no	92.706	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-util	yes	84.711	no
[Ref.: #69480]	glucose-ferment	no	85.001	no

Availability in culture collections External links

[Ref.: #3295]

Culture collection no.

DSM 8553, ATCC 51532, NCIMB 13336, JCM 11601, BCRC 17424, CCM 4465, NBRC 110748

[Ref.: #85743]

SI-ID 43037

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Distribution of F- and A/V-type ATPases in Thermus scotoductus and other closely related species.	Lapierre P, Shial R, Gogarten JP	Syst Appl Microbiol	10.1016/j.syapm.2005.06.004	2005	*
Phylogeny	Thermus brevis sp. nov., a moderately thermophilic bacterium isolated from a hot spring microbial mat.	Hu CJ, Xian WD, Luo XQ, Liu L, Li MM, Jiao JY, Tan S, Zhou EM, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005265	2022	*
Phylogeny	Physiological and genomic properties of Thermus tenuipuniceus sp. nov., a novel slight reddish color member isolated from a terrestrial geothermal spring.	Zhou EM, Xian WD, Jiao JY, Liu L, Li MM, Ding YP, Yin YR, Zhao J, Nimaichand S, Xiao M, Li WJ	Syst Appl Microbiol	10.1016/j.syapm.2018.08.011	2018	*
Phylogeny	Thermus caldifontis sp. nov., a thermophilic bacterium isolated from a hot spring.	Khan IU, Habib N, Hussain F, Xian WD, Amin A, Zhou EM, Ahmed I, Zhi XY, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002037	2017	*
Phylogeny	Thermus amyloliquefaciens sp. nov., isolated from a hot spring sediment sample.	Yu TT, Ming H, Yao JC, Zhou EM, Park DJ, Hozzein WN, Kim CJ, Wadaan MAM, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.000289	2015	*
Phylogeny	Isolation and characterization of a mixotrophic sulfur-oxidizing Thermus scotoductus.	Skirnisdottir S, Hreggvidsson GO, Holst O, Kristjansson JK	Extremophiles	10.1007/s007920000172	2001	*

References

#3295

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8553

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85743

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43037.1 )

* These data were automatically processed and therefore are not curated

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Thermus scotoductus DSM 8553 DSM 8553

Thermus scotoductus DSM 8553

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