Name: Thermus filiformis Wai 33 A1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16723

Type strain:

Species: Thermus filiformis

Strain Designation: Wai 33 A1

Culture col. no.: DSM 4687, ATCC 43280, JCM 11600, BCRC 17263, CCM 4200, NCIMB 12588

Strain history: NCIMB 12588 <-- J. A. Hudson Wai33 A1.

NCBI tax ID(s): 276 (species)

Section

Thermus filiformis Wai 33 A1 is a thermophilic bacterium that was isolated from hot spring.

thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	25-08-2022 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Deinococcota
	Class	Deinococci
	Order	Thermales
	Family	Thermaceae
	Genus	Thermus
	Species	Thermus filiformis
	Full Scientific Name (PNU)	Thermus filiformis Hudson et al. 1987

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1682]

Culture medium

THERMUS 162 MEDIUM (DSMZ Medium 878)

[Ref.: #1682]

Culture medium growth

[Ref.: #1682]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1682]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1682]			growth	70 °C
[Ref.: #67770]			growth	60 °C

[Ref.: #1682]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1682]	Sample type/isolated from	hot spring
[Ref.: #1682]	Country	New Zealand
[Ref.: #1682]	Country ISO 3 Code	NZL
[Ref.: #1682]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Hot spring in the Waimangu thermal valley
[Ref.: #67770]	Country	New Zealand
[Ref.: #67770]	Country ISO 3 Code	NZL
[Ref.: #67770]	Continent	Australia and Oceania

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1682]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	T.filiformis 16S ribosomal RNA, part	X58345	1144	ENA	276 tax ID	*
[Ref.: #20218]	Thermus filiformis partial 16S rRNA gene, type strain DSM 4687T, clone 1	FR749950	1512	ENA	276 tax ID	*
[Ref.: #20218]	Thermus filiformis partial 16S rRNA gene, type strain DSM 4687T, clone 2	FR749951	1513	ENA	276 tax ID	*
[Ref.: #20218]	Thermus filiformis partial 16S rRNA gene, type strain DSM 4687T, clone 3	FR749952	1514	ENA	276 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermus filiformis ATCC 43280	GCA_000771745	contig	GenBank	276 tax ID	*
[Ref.: #66792]	Thermus filiformis ATCC 43280	276.5	wgs	PATRIC	276 tax ID	*
[Ref.: #66792]	Thermus filiformis ATCC 43280	2639763100	draft	JGI IMG/M	276 tax ID	*
[Ref.: #67770]	Thermus filiformis strain ATCC 43280, whole genome shotgun sequencing project	JPSL00000000		GenBank	276 tax ID

[Ref.: #67770]

GC-content

65 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #1682]

Culture collection no.

DSM 4687, ATCC 43280, JCM 11600, BCRC 17263, CCM 4200, NCIMB 12588

[Ref.: #20218]

Associated Passport(s) in StrainInfo

158927, 112406

Literature:

Title	Authors	Journal	DOI	Year	Mesh	Topic	Topic2
Distribution of F- and A/V-type ATPases in Thermus scotoductus and other closely related species.	Lapierre P, Shial R, Gogarten JP	Syst Appl Microbiol	10.1016/j.syapm.2005.06.004	2005	Adenosine Triphosphatases/genetics/metabolism, Amino Acid Sequence, Base Sequence, Blotting, Southern, DNA, Bacterial/chemistry/genetics, Evolution, Molecular, Molecular Sequence Data, Phylogeny, Polymerase Chain Reaction, RNA, Ribosomal, 16S/chemistry/genetics, Sequence Alignment, Thermus/enzymology/genetics, Vacuolar Proton-Translocating ATPases/genetics/metabolism	Phylogeny	Metabolism	*
Draft Genome Sequence of the Thermophile Thermus filiformis ATCC 43280, Producer of Carotenoid-(Di)glucoside-Branched Fatty Acid (Di)esters and Source of Hyperthermostable Enzymes of Biotechnological Interest.	Mandelli F, Oliveira Ramires B, Couger MB, Paixao DA, Camilo CM, Polikarpov I, Prade R, Riano-Pachon DM, Squina FM	Genome Announc	10.1128/genomeA.00475-15	2015		Enzymology	Genetics	*

References

#1682

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4687

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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