Name: Thermus filiformis Wai 33 A1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16723

Type strain:

Species: Thermus filiformis

Strain Designation: Wai 33 A1

Culture col. no.: DSM 4687, ATCC 43280, JCM 11600, BCRC 17263, CCM 4200, NCIMB 12588

Strain history: NCIMB 12588 <-- J. A. Hudson Wai33 A1.

NCBI tax ID(s): 276 (species)

SI-ID 41751

ATCC 43280, DSM 4687, NCIMB 12588, CCM 4200, KCTC 2672, JCM 11600, BCRC 17263, CCRC 17263

Special Collections

DSMZ
JCM

Section

Thermus filiformis Wai 33 A1 is a Gram-negative bacterium that was isolated from hot spring.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Thermales*
	Family	*Thermaceae*
	Genus	*Thermus*
	Species	**Thermus filiformis**
	Full Scientific Name (LPSN)	Thermus filiformis Hudson et al. 1987

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1682]

Culture medium

THERMUS 162 MEDIUM (DSMZ Medium 878)

[Ref.: #1682]

Culture medium growth

[Ref.: #1682]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1682]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1682]			growth	70 °C
[Ref.: #67770]			growth	60 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1682]	Sample type/isolated from	hot spring
[Ref.: #1682]	Country	New Zealand
[Ref.: #1682]	Country ISO 3 Code	NZL
[Ref.: #1682]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Hot spring in the Waimangu thermal valley
[Ref.: #67770]	Country	New Zealand
[Ref.: #67770]	Country ISO 3 Code	NZL
[Ref.: #67770]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FR749952 (>99% sequence identity) for Thermus filiformis subclade from Microbeatlas

Aquatic Samples	818
Soil Samples	30
Animal Samples	191
Plant Samples	2
Total Samples	1041

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1682]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Thermus filiformis 16S ribosomal RNA (rrn) gene, partial sequence.	L09667	1475	GenBank ENA	276 tax ID	*
[Ref.: #20218]	T.filiformis 16S ribosomal RNA, part	X58345	1144	GenBank ENA	276 tax ID	*
[Ref.: #20218]	Thermus filiformis partial 16S rRNA gene, type strain DSM 4687T, clone 1	FR749950	1512	GenBank ENA	276 tax ID	*
[Ref.: #20218]	Thermus filiformis partial 16S rRNA gene, type strain DSM 4687T, clone 2	FR749951	1513	GenBank ENA	276 tax ID	*
[Ref.: #20218]	Thermus filiformis partial 16S rRNA gene, type strain DSM 4687T, clone 3	FR749952	1514	GenBank ENA	276 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thermus filiformis ATCC 43280	GCA_000771745	contig	GenBank ENA	276 tax ID
[Ref.: #66792]	Thermus filiformis ATCC 43280	276.5	wgs	PATRIC	276 tax ID	*
[Ref.: #66792]	Thermus filiformis ATCC 43280	2639763100	draft	JGI IMG/M	276 tax ID	*

[Ref.: #67770]

GC-content

65 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermus filiformis ATCC 43280 PATRIC: 276.5
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	56	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermus filiformis ATCC 43280 PATRIC: 276.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	71.91	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	81.622	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	70.715	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	72.354	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	74.752	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	79.102	no

Availability in culture collections External links

[Ref.: #1682]

Culture collection no.

DSM 4687, ATCC 43280, JCM 11600, BCRC 17263, CCM 4200, NCIMB 12588

[Ref.: #85742]

SI-ID 41751

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Distribution of F- and A/V-type ATPases in Thermus scotoductus and other closely related species.	Lapierre P, Shial R, Gogarten JP	Syst Appl Microbiol	10.1016/j.syapm.2005.06.004	2005	*
Enzymology	Draft Genome Sequence of the Thermophile Thermus filiformis ATCC 43280, Producer of Carotenoid-(Di)glucoside-Branched Fatty Acid (Di)esters and Source of Hyperthermostable Enzymes of Biotechnological Interest.	Mandelli F, Oliveira Ramires B, Couger MB, Paixao DA, Camilo CM, Polikarpov I, Prade R, Riano-Pachon DM, Squina FM	Genome Announc	10.1128/genomeA.00475-15	2015	*

References

#1682

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4687

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85742

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID41751.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Thermus filiformis ATCC 43280

Thermus filiformis ATCC 43280

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