Name: Oceanithermus desulfurans St55B
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16713

Type strain:

Species: Oceanithermus desulfurans

Strain Designation: St55B

Culture col. no.: DSM 15757, NBRC 100063

Strain history: <- K. Mori, Natl. Inst. of Technol. and Evaluation (NITE), Japan; St55B

NCBI tax ID(s): 1227550 (strain), 227924 (species)

SI-ID 134302

DSM 15757, NBRC 100063

Section

Oceanithermus desulfurans St55B is a thermophilic, Gram-negative bacterium that was isolated from chimney in the Suiyo Seamount in the Izu-Bonin Arc .

Gram-negative
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Deinococcota*
	Class	*Deinococci*
	Order	*Thermales*
	Family	*Thermaceae*
	Genus	*Oceanithermus*
	Species	**Oceanithermus desulfurans**
	Full Scientific Name (LPSN)	Oceanithermus desulfurans Mori et al. 2004

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.681

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6101]

Culture medium

OCEANITHERMUS MEDIUM (DSMZ Medium 1149)

[Ref.: #6101]

Culture medium growth

[Ref.: #6101]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6101]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6101]			growth	60 °C

[Ref.: #6101]	Temperature range	thermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.178

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %96
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.858

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6101]	Sample type/isolated from	chimney in the Suiyo Seamount (at a depth of 1390 m) in the Izu-Bonin Arc (28° 34' N 140° 39' E)
[Ref.: #6101]	Geographic location (country and/or sea, region)	Western Pacific
[Ref.: #6101]	Country	Japan
[Ref.: #6101]	Country ISO 3 Code	JPN
[Ref.: #6101]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Hydrothermal vent

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB107956 (>99% sequence identity) for Oceanithermus from Microbeatlas

Aquatic Samples	157
Soil Samples	55
Animal Samples	25
Plant Samples
Total Samples	237

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6101]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6101]	Oceanithermus desulfurans gene for 16S rRNA, partial sequence	AB107956	1383	ENA	1227550 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Oceanithermus desulfurans NBRC 100063	GCA_007991015	contig	GenBank	1227550 tax ID	*
[Ref.: #66792]	Oceanithermus desulfurans DSM 15757	GCA_014201675	contig	GenBank	227924 tax ID	*
[Ref.: #66792]	Oceanithermus desulfurans NBRC 100063	1227550.3	wgs	PATRIC	1227550 tax ID	*
[Ref.: #66792]	Oceanithermus desulfurans strain DSM 15757	227924.3	wgs	PATRIC	227924 tax ID	*
[Ref.: #66792]	Oceanithermus desulfurans DSM 15757	2861248673	draft	JGI IMG/M	227924 tax ID	*

[Ref.: #6101]

GC-content

71.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Oceanithermus desulfurans NBRC 100063 PATRIC: 1227550.3
[Ref.: #69481]	spore-forming	no	96	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Oceanithermus desulfurans NBRC 100063 PATRIC: 1227550.3
[Ref.: #69480]	motile	no	84.242	no
[Ref.: #69480]	gram-positive	no	93.104	no
[Ref.: #69480]	anaerobic	no	84.124	no
[Ref.: #69480]	aerobic	no	80.136	no
[Ref.: #69480]	halophile	no	83.79	no
[Ref.: #69480]	spore-forming	no	93.289	no
[Ref.: #69480]	thermophile	yes	99.539	no
[Ref.: #69480]	glucose-util	yes	80.718	no
[Ref.: #69480]	flagellated	no	97.618	no
[Ref.: #69480]	glucose-ferment	no	83.568	no

Availability in culture collections External links

[Ref.: #6101]

Culture collection no.

DSM 15757, NBRC 100063

[Ref.: #85732]

SI-ID 134302

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Oceanithermus desulfurans sp. nov., a novel thermophilic, sulfur-reducing bacterium isolated from a sulfide chimney in Suiyo Seamount.	Mori K, Kakegawa T, Higashi Y, Nakamura KI, Maruyama A, Hanada S	Int J Syst Evol Microbiol	10.1099/ijs.0.02962-0	2004	*

References

#6101

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15757

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85732

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134302.1 )

* These data were automatically processed and therefore are not curated

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Oceanithermus desulfurans NBRC 100063

Oceanithermus desulfurans NBRC 100063

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