Name: Borrelia japonica JCM 8951
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 165979

Type strain:

Species: Borrelia japonica

Culture col. no.: JCM 8951, ATCC 51557

Strain history: T. Masuzawa HO14.

NCBI tax ID(s): 34095 (species)

SI-ID 43047

ATCC 51557, JCM 8951

Special Collections

Section

Borrelia japonica JCM 8951 is a Gram-negative bacterium that was isolated from Ixodod tick .

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Spirochaetota*
	Class	*Spirochaetia*
	Order	*Spirochaetales*
	Family	*Borreliaceae*
	Genus	*Borrelia*
	Species	**Borrelia japonica**
	Full Scientific Name (LPSN)	Borrelia japonica Kawabata et al. 1994

Synonym

Borreliella japonica

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	33 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %94.864
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Ixodod tick (Ixodes ovatus)
[Ref.: #67770]	Host species	Ixodes ovatus
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hokkaido
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Borrelia japonica 16S ribosomal RNA (16S rRNA) gene	L40597	1494	GenBank ENA	34095 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Borreliella japonica ATCC 51557	GCA_900099615	scaffold	GenBank ENA	34095 tax ID
[Ref.: #66792]	Borreliella japonica strain ATCC 51557	34095.9	wgs	PATRIC	34095 tax ID	*
[Ref.: #66792]	Borreliella japonica ATCC 51557	2597490341	draft	JGI IMG/M	34095 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Borreliella japonica ATCC 51557 NCBI: GCA_900099615.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Borreliella japonica strain ATCC 51557 PATRIC: 34095.9
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	82.706	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	81.5	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	94.864	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	94.382	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	89.631	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	50.448	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 8951, ATCC 51557

[Ref.: #114683]

SI-ID 43047

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#114683

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID43047.1 )

* These data were automatically processed and therefore are not curated

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Borreliella japonica ATCC 51557

Borreliella japonica strain ATCC 51557

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