Strain identifier
BacDive ID: 165979
Type strain: 
Species: Borrelia japonica
Strain history: T. Masuzawa HO14.
NCBI tax ID(s): 34095 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 165979
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Borrelia japonica JCM 8951 is a mesophilic bacterium that was isolated from Ixodod tick .
NCBI tax id
- NCBI tax id: 34095
- Matching level: species
strain history
- @ref: 67770
- history: T. Masuzawa HO14.
doi: 10.13145/bacdive165979.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Spirochaetales
- family: Borreliaceae
- genus: Borrelia
- species: Borrelia japonica
- full scientific name: Borrelia japonica Kawabata et al. 1994
synonyms
- @ref: 20215
- synonym: Borreliella japonica
@ref: 67770
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Spirochaetales
family: Borreliaceae
genus: Borreliella
species: Borreliella japonica
full scientific name: Borreliella japonica (Kawabata et al. 1994) Adeolu and Gupta 2015
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 33
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 94.864 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Ixodod tick (Ixodes ovatus)
- host species: Ixodes ovatus
- geographic location: Hokkaido
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Borrelia japonica 16S ribosomal RNA (16S rRNA) gene
- accession: L40597
- length: 1494
- database: nuccore
- NCBI tax ID: 34095
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Borreliella japonica strain ATCC 51557 | 34095.9 | wgs | patric | 34095 |
| 66792 | Borreliella japonica ATCC 51557 | 2597490341 | draft | img | 34095 |
| 67770 | Borreliella japonica ATCC 51557 | GCA_900099615 | scaffold | ncbi | 34095 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 82.706 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 81.5 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 94.864 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 94.382 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 89.631 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 50.448 | no |
External links
@ref: 67770
culture collection no.: JCM 8951, ATCC 51557
straininfo link
- @ref: 114683
- straininfo: 43047
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |
| 114683 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID43047.1 |