Nonomuraea candida (DSM 45086, NBRC 107354, NRRL B-24552)

Name: Nonomuraea candida (DSM 45086, NBRC 107354, NRRL B-24552)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16562

Type strain

Strain Designation HMC10

Culture col. no. DSM 45086 NBRC 107354 NRRL B-24552 HMC10 CGMCC 4.5717 1 more

NCBI tax ID(s) 359159

Special Collections DSMZ JCM

Links

Nonomuraea candida HMC10 is a mesophilic prokaryote that was isolated from soil.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 407823

NBRC 107354,JCM 15928,DSM 45086

@ref 20215

Last LPSN update 2025-12-16 09:50:52

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Nonomuraea

Species Nonomuraea candida

Full scientific name Nonomuraea candida le Roes and Meyers 2009

Morphology

Multimedia

@ref:	12328
multimedia content:	DSM_45086.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45086.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
12328	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
12328	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
12328	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
12328	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12328	soil	Swartberg Nature Reserve	South Africa	ZAF	Africa
67770	Soil from the banks of the Gamka River in the Swartberg Nature Reserve	Western Cape Province	South Africa	ZAF	Africa

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12328	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	Doro.v1.0 assembly for Nonomuraea candida NRRL B-24552	scaffold	GCA_000725485	359159.3	2775506921	359159	25.11

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12328	Nonomuraea candida strain HMC10 16S ribosomal RNA gene, partial sequence	DQ285421	1408		359159

GC content

@ref	GC-content (mol%)	Method
67770	72.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nonomuraea candida NRRL B-24552
NCBI: GCA_000725485.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	88.79	no
125438	anaerobic	anaerobicⓘ	no	94.35	no
125438	aerobic	aerobicⓘ	yes	87.86	no
125438	spore-forming	spore-formingⓘ	yes	89.06	no
125438	thermophilic	thermophileⓘ	no	94.33	no
125438	flagellated	motile2+ⓘ	no	84.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Complete genome sequence of the actinomycete Actinoalloteichus hymeniacidonis type strain HPA 177^T isolated from a marine sponge.	Schaffert L, Albersmeier A, Winkler A, Kalinowski J, Zotchev SB, Ruckert C.	Stand Genomic Sci	10.1186/s40793-016-0213-3	2016
	Draft Genome Sequence of Nonomuraea sp. TP-A0861, a Producer of Myxochelin A.	Komaki H, Ichikawa N, Hosoyama A, Fujita N, Igarashi Y.	Genome Announc	10.1128/genomea.01430-15	2015
Phylogeny	Characterization of antibiotic producing rare actinomycete Nonomuraea sp. JAJ18 derived from an Indian coastal solar saltern.	Arul Jose P, Sivakala KK, Rajeswari P, Jebakumar SR	ScientificWorldJournal	10.1155/2014/456070	2014
Phylogeny	Nonomuraea candida sp. nov., a new species from South African soil.	Roes Ml, Meyers PR	Antonie Van Leeuwenhoek	10.1007/s10482-007-9187-x	2007
Phylogeny	Comprehensive genome analysis of a novel actinobacterium with high potential for biotechnological applications, Nonomuraea aridisoli sp. nov., isolated from desert soil.	Saygin H, Ay H, Guven K, Cetin D, Sahin N	Antonie Van Leeuwenhoek	10.1007/s10482-021-01654-z	2021
Phylogeny	Nonomuraea antri sp. nov., an actinomycete isolated from cave soil in Thailand.	Lipun K, Teo WFA, Suksaard P, Pathom-Aree W, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004413	2020
Phylogeny	Nonomuraea nitratireducens sp. nov., a new actinobacterium isolated from Suaeda australis Moq. rhizosphere.	Ou Y, Sheng Y, Hu X, Leng D, Huang J, Hu Z, Bai L, Deng Z, Kang Q, Wu Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004377	2020
Phylogeny	Nonomuraea typhae sp. nov., an endophytic actinomycete isolated from the root of cattail pollen (Typha angustifolia L.).	Peng C, Zhuang X, Wang Z, Gao C, Zhao J, Song J, Liu C, Shen Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004249	2020
Phylogeny	Nonomuraea basaltis sp. nov., a siderophore-producing actinobacteria isolated from surface soil of basaltic parent material.	Saricaoglu S, Saygin H, Topkara AR, Gencbay T, Guven K, Cetin D, Sahin N, Isik K	Arch Microbiol	10.1007/s00203-020-01866-3	2020
Phylogeny	Nonomuraea phyllanthi sp. nov., an endophytic actinomycete isolated from the leaf of Phyllanthus amarus.	Klykleung N, Yuki M, Kudo T, Ohkuma M, Phongsopitanun W, Pittayakhajonwut P, Tanasupawat S	Arch Microbiol	10.1007/s00203-019-01717-w	2019
Phylogeny	Nonomuraea suaedae sp. nov., isolated from rhizosphere soil of Suaeda maritima (L.) Dumort.	Lipun K, Teo WFA, Tongpan J, Matsumoto A, Duangmal K	J Antibiot (Tokyo)	10.1038/s41429-019-0159-y	2019
Phylogeny	Desertiactinospora gelatinilytica gen. nov., sp. nov., a new member of the family Streptosporangiaceae isolated from the Karakum Desert.	Saygin H, Ay H, Guven K, Cetin D, Sahin N	Antonie Van Leeuwenhoek	10.1007/s10482-018-1169-7	2018
Phylogeny	Nonomuraea mangrovi sp. nov., an actinomycete isolated from mangrove soil.	Huang H, Liu M, Zhong W, Mo K, Zhu J, Zou X, Hu Y, Bao S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002954	2018
Phylogeny	Nonomuraea cavernae sp. nov., a novel actinobacterium isolated from a karst cave sample.	Fang BZ, Hua ZS, Han MX, Zhang ZT, Wang YH, Yang ZW, Zhang WQ, Xiao M, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002364	2017
Phylogeny	Nonomuraea zeae sp. nov., isolated from the rhizosphere of corn (Zea mays L.).	Shen Y, Jia F, Liu C, Li J, Guo S, Zhou S, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.001019	2016
Phylogeny	Nonomuraea flavida sp. nov., a novel species of soil actinomycete isolated from Aconitum napellus rhizosphere.	Chen S, Shi J, Li D, Wu Y, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.000538	2015
Phylogeny	Nonomuraea guangzhouensis sp. nov., and Nonomuraea harbinensis sp. nov., two novel actinomycetes isolated from soil.	Wang S, Liu C, Zhang Y, Zhao J, Zhang X, Yang L, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-013-0058-3	2013
Phylogeny	Nonomuraea solani sp. nov., an actinomycete isolated from eggplant root (Solanum melongena L.).	Wang X, Zhao J, Liu C, Wang J, Shen Y, Jia F, Wang L, Zhang J, Yu C, Xiang W	Int J Syst Evol Microbiol	10.1099/ijs.0.045617-0	2012
Phylogeny	Nonomuraea jabiensis sp. nov., isolated from arid soil.	Camas M, Sazak A, Sproer C, Klenk HP, Cetin D, Guven K, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.039362-0	2012
Phylogeny	Nonomuraea jiangxiensis sp. nov., isolated from acidic soil.	Li X, Zhang L, Ding Y, Gao Y, Ruan J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijs.0.034520-0	2011
Phylogeny	Nonomuraea endophytica sp. nov., an endophytic actinomycete isolated from Artemisia annua L.	Li J, Zhao GZ, Huang HY, Zhu WY, Lee JC, Xu LH, Kim CJ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.022558-0	2010
Phylogeny	Nonomuraea antimicrobica sp. nov., an endophytic actinomycete isolated from a leaf of Maytenus austroyunnanensis.	Qin S, Zhao GZ, Klenk HP, Li J, Zhu WY, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.010660-0	2009

References

#12328	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45086
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nonomuraea candida (DSM 45086, NBRC 107354, NRRL B-24552)

Name and taxonomic classification

Morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000725485

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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