Name: Nonomuraea candida HMC10
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16562

Type strain:

Species: Nonomuraea candida

Strain Designation: HMC10

Culture col. no.: DSM 45086, NBRC 107354, NRRL B-24552, JCM 15928, CGMCC 4.5717

Strain history: NRRL B-24552 <-- P. R. Meyers HMC 10.

NCBI tax ID(s): 359159 (species)

SI-ID 407823

DSM 45086

Section

Nonomuraea candida HMC10 is a spore-forming, mesophilic bacterium that was isolated from soil.

spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Streptosporangiaceae*
	Genus	*Nonomuraea*
	Species	**Nonomuraea candida**
	Full Scientific Name (LPSN)	Nonomuraea candida le Roes and Meyers 2009

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.493

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #12328]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #12328]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12328]	Sample type/isolated from	soil
[Ref.: #12328]	Geographic location (country and/or sea, region)	Swartberg Nature Reserve
[Ref.: #12328]	Country	South Africa
[Ref.: #12328]	Country ISO 3 Code	ZAF
[Ref.: #12328]	Continent	Africa

[Ref.: #67770]	Sample type/isolated from	Soil from the banks of the Gamka River in the Swartberg Nature Reserve
[Ref.: #67770]	Geographic location (country and/or sea, region)	Western Cape Province
[Ref.: #67770]	Country	South Africa
[Ref.: #67770]	Country ISO 3 Code	ZAF
[Ref.: #67770]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #12328]	Nonomuraea candida strain HMC10 16S ribosomal RNA gene, partial sequence	DQ285421	1408	ENA	359159 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Nonomuraea candida NRRL B-24552	GCA_000725485	scaffold	GenBank	359159 tax ID

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GC-content

72.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nonomuraea candida NRRL B-24552 NCBI: GCA_000725485.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nonomuraea candida NRRL B-24552 NCBI: GCA_000725485.1
[Ref.: #69480]	motile	no	88.656	no
[Ref.: #69480]	flagellated	no	96.914	no
[Ref.: #69480]	gram-positive	yes	89.477	no
[Ref.: #69480]	anaerobic	no	99.25	no
[Ref.: #69480]	aerobic	yes	94.684	no
[Ref.: #69480]	halophile	no	91.429	no
[Ref.: #69480]	spore-forming	yes	95.561	no
[Ref.: #69480]	glucose-util	yes	87.575	no
[Ref.: #69480]	glucose-ferment	no	91.716	no
[Ref.: #69480]	thermophile	no	97.802	no

Availability in culture collections External links

[Ref.: #12328]

Culture collection no.

DSM 45086, NBRC 107354, NRRL B-24552, JCM 15928, CGMCC 4.5717

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SI-ID 407823

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nonomuraea candida sp. nov., a new species from South African soil.	Roes Ml, Meyers PR	Antonie Van Leeuwenhoek	10.1007/s10482-007-9187-x	2007	*
Phylogeny	Comprehensive genome analysis of a novel actinobacterium with high potential for biotechnological applications, Nonomuraea aridisoli sp. nov., isolated from desert soil.	Saygin H, Ay H, Guven K, Cetin D, Sahin N	Antonie Van Leeuwenhoek	10.1007/s10482-021-01654-z	2021	*
Phylogeny	Nonomuraea antri sp. nov., an actinomycete isolated from cave soil in Thailand.	Lipun K, Teo WFA, Suksaard P, Pathom-Aree W, Duangmal K	Int J Syst Evol Microbiol	10.1099/ijsem.0.004413	2020	*
Phylogeny	Nonomuraea nitratireducens sp. nov., a new actinobacterium isolated from Suaeda australis Moq. rhizosphere.	Ou Y, Sheng Y, Hu X, Leng D, Huang J, Hu Z, Bai L, Deng Z, Kang Q, Wu Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004377	2020	*
Phylogeny	Nonomuraea typhae sp. nov., an endophytic actinomycete isolated from the root of cattail pollen (Typha angustifolia L.).	Peng C, Zhuang X, Wang Z, Gao C, Zhao J, Song J, Liu C, Shen Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.004249	2020	*
Phylogeny	Nonomuraea basaltis sp. nov., a siderophore-producing actinobacteria isolated from surface soil of basaltic parent material.	Saricaoglu S, Saygin H, Topkara AR, Gencbay T, Guven K, Cetin D, Sahin N, Isik K	Arch Microbiol	10.1007/s00203-020-01866-3	2020	*
Phylogeny	Nonomuraea phyllanthi sp. nov., an endophytic actinomycete isolated from the leaf of Phyllanthus amarus.	Klykleung N, Yuki M, Kudo T, Ohkuma M, Phongsopitanun W, Pittayakhajonwut P, Tanasupawat S	Arch Microbiol	10.1007/s00203-019-01717-w	2019	*
Phylogeny	Nonomuraea suaedae sp. nov., isolated from rhizosphere soil of Suaeda maritima (L.) Dumort.	Lipun K, Teo WFA, Tongpan J, Matsumoto A, Duangmal K	J Antibiot (Tokyo)	10.1038/s41429-019-0159-y	2019	*
Phylogeny	Desertiactinospora gelatinilytica gen. nov., sp. nov., a new member of the family Streptosporangiaceae isolated from the Karakum Desert.	Saygin H, Ay H, Guven K, Cetin D, Sahin N	Antonie Van Leeuwenhoek	10.1007/s10482-018-1169-7	2018	*
Phylogeny	Nonomuraea mangrovi sp. nov., an actinomycete isolated from mangrove soil.	Huang H, Liu M, Zhong W, Mo K, Zhu J, Zou X, Hu Y, Bao S	Int J Syst Evol Microbiol	10.1099/ijsem.0.002954	2018	*
Phylogeny	Nonomuraea cavernae sp. nov., a novel actinobacterium isolated from a karst cave sample.	Fang BZ, Hua ZS, Han MX, Zhang ZT, Wang YH, Yang ZW, Zhang WQ, Xiao M, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.002364	2017	*
Phylogeny	Nonomuraea zeae sp. nov., isolated from the rhizosphere of corn (Zea mays L.).	Shen Y, Jia F, Liu C, Li J, Guo S, Zhou S, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.001019	2016	*
Phylogeny	Nonomuraea flavida sp. nov., a novel species of soil actinomycete isolated from Aconitum napellus rhizosphere.	Chen S, Shi J, Li D, Wu Y, Huang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.000538	2015	*
Phylogeny	Characterization of antibiotic producing rare actinomycete Nonomuraea sp. JAJ18 derived from an Indian coastal solar saltern.	Arul Jose P, Sivakala KK, Rajeswari P, Jebakumar SR	ScientificWorldJournal	10.1155/2014/456070	2014	*
Phylogeny	Nonomuraea guangzhouensis sp. nov., and Nonomuraea harbinensis sp. nov., two novel actinomycetes isolated from soil.	Wang S, Liu C, Zhang Y, Zhao J, Zhang X, Yang L, Wang X, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-013-0058-3	2013	*
Phylogeny	Nonomuraea solani sp. nov., an actinomycete isolated from eggplant root (Solanum melongena L.).	Wang X, Zhao J, Liu C, Wang J, Shen Y, Jia F, Wang L, Zhang J, Yu C, Xiang W	Int J Syst Evol Microbiol	10.1099/ijs.0.045617-0	2012	*
Phylogeny	Nonomuraea jabiensis sp. nov., isolated from arid soil.	Camas M, Sazak A, Sproer C, Klenk HP, Cetin D, Guven K, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.039362-0	2012	*
Phylogeny	Nonomuraea jiangxiensis sp. nov., isolated from acidic soil.	Li X, Zhang L, Ding Y, Gao Y, Ruan J, Huang Y	Int J Syst Evol Microbiol	10.1099/ijs.0.034520-0	2011	*
Phylogeny	Nonomuraea endophytica sp. nov., an endophytic actinomycete isolated from Artemisia annua L.	Li J, Zhao GZ, Huang HY, Zhu WY, Lee JC, Xu LH, Kim CJ, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.022558-0	2010	*
Phylogeny	Nonomuraea antimicrobica sp. nov., an endophytic actinomycete isolated from a leaf of Maytenus austroyunnanensis.	Qin S, Zhao GZ, Klenk HP, Li J, Zhu WY, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.010660-0	2009	*

References

#12328

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45086

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85589

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407823.1 )

* These data were automatically processed and therefore are not curated

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