Nonomuraea bangladeshensis (DSM 45128, CIP 109648, JCM 13930)

Name: Nonomuraea bangladeshensis (DSM 45128, CIP 109648, JCM 13930)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 16563

Type strain

Strain Designation 5-10-10

Culture col. no. DSM 45128 CIP 109648 JCM 13930 MTCC 8089 5-10-10 1 more

NCBI tax ID(s) 404385

Special Collections DSMZ JCM CIP Wink compendium Literature strains

History <- JCM <- T. Kudo <- I. Ara; 5-10-10 T. Kudo <-- I. Ara 5-10-10. CIP <- 2007, JCM <- 2006, I. Ara, Kitasato Univ., Tokyo, Japan: strain 5-10-10

Links

Nonomuraea bangladeshensis 5-10-10 is an aerobe, spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from sandy soil.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 309470

JCM 13930,DSM 45128,CIP 109647

@ref 20215

Last LPSN update 2026-02-09 11:22:00

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Streptosporangiales

Family Streptosporangiaceae

Genus Nonomuraea

Species Nonomuraea bangladeshensis

Full scientific name Nonomuraea bangladeshensis Ara et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
32160	positive
116728	positive	rod-shaped

Colony morphology

@ref	Colony color	Incubation period	Medium used
20167	Oxide red (3009)	10-14 days	ISP 2
20167	Rose (3017)	10-14 days	ISP 3
20167	Light pink (3015)	10-14 days	ISP 4
20167	Light pink (3015)	10-14 days	ISP 5
20167	Brown beige (1011)	10-14 days	ISP 6
20167	Light pink (3015)	10-14 days	ISP 7

Multicellular morphology

@ref	Complex name	Complex color	Medium name
20167			ISP 2
20167	Aerial Mycelium	Cream	ISP 3
20167			ISP 4
20167			ISP 5
20167	Aerial Mycelium	Brown beige	ISP 6
20167			ISP 7

Multimedia

@ref:	12375
multimedia content:	DSM_45128.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_45128.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
12375	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
12375	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
20167	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
20167	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
20167	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
20167	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
20167	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
20167	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
37804	MEDIUM 57 - for Streptomyces, Nocardioides, Lentzea albidocapillata and Streptoverticillium reticulum		Distilled water make up to (1000.000 ml);Agar (15.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g);Calcium carbonate (2.000 g)
12375	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
116728	CIP Medium 57	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
12375	positive	growth	28
20167	positive	optimum	28
32160	positive	growth	15-45
32160	positive	optimum	30
37804	positive	growth	30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
32160	positive	optimum	7
32160	positive	growth	5.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

32160

Oxygen toleranceaerobe

Spore formation

32160

Spore formationyes

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32160	NaCl	positive	growth	0.0-5.0 %
32160	NaCl	positive	optimum	2.5 %

Observation

67770

Observationquinones: MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
20167	22599 ChEBI	arabinose	+
32160	22599 ChEBI	arabinose	+	carbon source
32160	17057 ChEBI	cellobiose	+	carbon source
20167	62968 ChEBI	cellulose	+
20167	28757 ChEBI	fructose	+
32160	28757 ChEBI	fructose	+	carbon source
20167	17234 ChEBI	glucose	+
32160	17754 ChEBI	glycerol	+	carbon source
20167	29864 ChEBI	mannitol	+
32160	29864 ChEBI	mannitol	+	carbon source
32160	37684 ChEBI	mannose	+	carbon source
20167	17268 ChEBI	myo-inositol	+
32160	17268 ChEBI	myo-inositol	+	carbon source
116728	17632 ChEBI	nitrate	+	reduction
116728	16301 ChEBI	nitrite	-	reduction
20167	16634 ChEBI	raffinose	+
32160	16634 ChEBI	raffinose	+	carbon source
20167	26546 ChEBI	rhamnose	+
32160	26546 ChEBI	rhamnose	+	carbon source
20167	17992 ChEBI	sucrose	+
32160	17992 ChEBI	sucrose	+	carbon source
20167	18222 ChEBI	xylose	+
32160	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116728	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116728	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
116728	oxidase	+
116728	urease	-	3.5.1.5

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
20167	not determinedn.d.	+	+	+	+	+	+	-	-	+	+	+	+	+	-	+	+	+	-	-
116728	-	+	+	+	-	+	-	-	+	+	-	-	-	-	-	+	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
12375	sandy soil	Bangladesh, Cox's Bazar	Bangladesh	BGD	Asia
67770	Sandy soil	Cox's Bazar	Bangladesh	BGD	Asia
116728	Environment, Soil, sand	Cox's Bazar	Bangladesh	BGD	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
12375	1	Risk group (German classification) According to TRBA 466
20167	1	German classification According to TRBA 466
116728	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3952945v1 assembly for Nonomuraea bangladeshensis JCM 13930	scaffold	GCA_039529455	404385	56.61

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
12375	Nonomuraea bangladeshensis gene for 16S rRNA	AB274966	1513		404385

GC content

@ref	GC-content (mol%)	Method
12375	72.7
67770	72.7	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nonomuraea fuscirosea sp. nov., an actinomycete isolated from the rhizosphere soil of rehmannia (Rehmannia glutinosa Libosch).	Zhang X, Zhang Y, Zhao J, Liu C, Wang S, Yang L, He H, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijs.0.057877-0	2013
Phylogeny	Nonomuraea bangladeshensis sp. nov. and Nonomuraea coxensis sp. nov.	Ara I, Kudo T, Matsumoto A, Takahashi Y, Omura S	Int J Syst Evol Microbiol	10.1099/ijs.0.65054-0	2007

References

#12375	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45128
#20167	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28403	IJSEM 1504 2007 ( DOI 10.1099/ijs.0.65054-0 , PubMed 17625184 )
#32160	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28403
#37804	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#116728	Collection of Institut Pasteur ; Curators of the CIP; CIP 109647
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nonomuraea bangladeshensis (DSM 45128, CIP 109648, JCM 13930)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039529455

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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