Name: Ruminococcus torques JCM 6553
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 165415

Type strain:

Species: Ruminococcus torques

Culture col. no.: JCM 6553, ATCC 27756, VPI B2-51

Strain history: Y. Benno <-- T. Mitsuoka <-- ATCC 27756 <-- L. V. Holdeman VPI B2-51.

NCBI tax ID(s): 411460 (strain), 33039 (species)

SI-ID 39159

ATCC 27756

Other strains from Ruminococcus torques

R. torques JCM 31259

Section

Ruminococcus torques JCM 6553 is a mesophilic bacterium that was isolated from Human feces.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Oscillospiraceae*
	Genus	*Ruminococcus*
	Species	**Ruminococcus torques**
	Full Scientific Name (LPSN)	Ruminococcus torques Holdeman and Moore 1974 (Approved Lists 1980)

Synonym

"Mediterraneibacter torques"

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Human feces
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence L76604 (>99% sequence identity) for [Ruminococcus] torques subclade from Microbeatlas

Aquatic Samples	936
Soil Samples	124
Animal Samples	49154
Plant Samples	89
Total Samples	50303

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Ruminococcus torques small subunit ribosomal RNA (16S rDNA) gene	L76604	1418	ENA	411460 tax ID
[Ref.: #67770]	[Ruminococcus] torques gene for 16S ribosomal RNA, partial sequence	AB910746	1492	ENA	33039 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Ruminococcus torques ATCC 27756	411460.6	wgs	PATRIC	411460 tax ID	*
[Ref.: #66792]	Blautia torques ATCC 27756	640963025	draft	JGI IMG/M	411460 tax ID	*
[Ref.: #66792]	[Ruminococcus] torques ATCC 27756	GCA_000153925	scaffold	GenBank	411460 tax ID	*

[Ref.: #67770]

GC-content

42 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Ruminococcus torques ATCC 27756 PATRIC: 411460.6
[Ref.: #69480]	gram-positive	yes	95.382	no
[Ref.: #69480]	anaerobic	yes	99.998	no
[Ref.: #69480]	halophile	no	77.611	no
[Ref.: #69480]	spore-forming	no	73.546	no
[Ref.: #69480]	glucose-util	yes	92.566	no
[Ref.: #69480]	aerobic	no	98.84	no
[Ref.: #69480]	flagellated	no	95.796	no
[Ref.: #69480]	thermophile	no	93.333	yes
[Ref.: #69480]	motile	no	93.749	no
[Ref.: #69480]	glucose-ferment	yes	78.576	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 6553, ATCC 27756, VPI B2-51

[Ref.: #114463]

SI-ID 39159

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Mediterraneibacter massiliensis, gen. nov., sp. nov., a new genus isolated from the gut microbiota of an obese patient and reclassification of Ruminococcus faecis, Ruminococcus lactaris, Ruminococcus torques, Ruminococcus gnavus and Clostridium glycyrrhizinilyticum as Mediterraneibacter faecis comb. nov., Mediterraneibacter lactaris comb. nov., Mediterraneibacter torques comb. nov., Mediterraneibacter gnavus comb. nov. and Mediterraneibacter glycyrrhizinilyticus comb. nov.	Togo AH, Diop A, Bittar F, Maraninchi M, Valero R, Armstrong N, Dubourg G, Labas N, Richez M, Delerce J, Levasseur A, Fournier PE, Raoult D, Million M	Antonie Van Leeuwenhoek	10.1007/s10482-018-1104-y	2018	*
Phylogeny	Sellimonas intestinalis gen. nov., sp. nov., isolated from human faeces.	Seo B, Yoo JE, Lee YM, Ko G	Int J Syst Evol Microbiol	10.1099/ijsem.0.000817	2015	*
Phylogeny	Mediterraneibacter catenae SW178 sp. nov., an intestinal bacterium of feral chicken.	Wongkuna S, Ghimire S, Chankhamhaengdecha S, Janvilisri T, Scaria J	PeerJ	10.7717/peerj.11050	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114463

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39159.1 )

* These data were automatically processed and therefore are not curated

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Ruminococcus torques ATCC 27756

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