Strain identifier

BacDive ID: 165415

Type strain: Yes

Species: Ruminococcus torques

Strain history: Y. Benno <-- T. Mitsuoka <-- ATCC 27756 <-- L. V. Holdeman VPI B2-51.

NCBI tax ID(s): 411460 (strain), 33039 (species)

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General

@ref: 67770

BacDive-ID: 165415

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Ruminococcus torques JCM 6553 is an anaerobe, mesophilic bacterium that was isolated from Human feces.

NCBI tax id

NCBI tax idMatching level
411460strain
33039species

strain history

  • @ref: 67770
  • history: Y. Benno <-- T. Mitsuoka <-- ATCC 27756 <-- L. V. Holdeman VPI B2-51.

doi: 10.13145/bacdive165415.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Oscillospiraceae
  • genus: Ruminococcus
  • species: Ruminococcus torques
  • full scientific name: Ruminococcus torques Holdeman and Moore 1974 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Mediterraneibacter torques

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Eubacteriales

family: Oscillospiraceae

genus: Ruminococcus

species: Ruminococcus torques

full scientific name: Ruminococcus torques Holdeman and Moore 1974

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

oxygen tolerance

  • @ref: 69480
  • oxygen tolerance: anaerobe
  • confidence: 94.139

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Human feces

taxonmaps

  • @ref: 69479
  • File name: preview.99_4600.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_2294;97_2784;98_3455;99_4600&stattab=map
  • Last taxonomy: [Ruminococcus] torques subclade
  • 16S sequence: L76604
  • Sequence Identity:
  • Total samples: 50303
  • soil counts: 124
  • aquatic counts: 936
  • animal counts: 49154
  • plant counts: 89

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770[Ruminococcus] torques gene for 16S ribosomal RNA, partial sequenceAB9107461492nuccore33039
67770Ruminococcus torques small subunit ribosomal RNA (16S rDNA) geneL766041418nuccore411460
124043Ruminococcus torques gene for 16S ribosomal RNA, partial sequence, isolate: GIFU 12126.D141371385nuccore411460

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Ruminococcus torques ATCC 27756411460.6wgspatric411460
66792Blautia torques ATCC 27756640963025draftimg411460
66792[Ruminococcus] torques ATCC 27756GCA_000153925scaffoldncbi411460

GC content

  • @ref: 67770
  • GC-content: 42
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes81.804no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes94.139no
69480spore-formingspore-formingAbility to form endo- or exosporesno61.648no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no98.048no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno96.374yes
69480flagellatedmotile2+Ability to perform flagellated movementno84.012no

External links

@ref: 67770

culture collection no.: JCM 6553, ATCC 27756, VPI B2-51

straininfo link

  • @ref: 114463
  • straininfo: 39159

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26637816Sellimonas intestinalis gen. nov., sp. nov., isolated from human faeces.Seo B, Yoo JE, Lee YM, Ko GInt J Syst Evol Microbiol10.1099/ijsem.0.0008172015
Phylogeny29855844Description of Mediterraneibacter massiliensis, gen. nov., sp. nov., a new genus isolated from the gut microbiota of an obese patient and reclassification of Ruminococcus faecis, Ruminococcus lactaris, Ruminococcus torques, Ruminococcus gnavus and Clostridium glycyrrhizinilyticum as Mediterraneibacter faecis comb. nov., Mediterraneibacter lactaris comb. nov., Mediterraneibacter torques comb. nov., Mediterraneibacter gnavus comb. nov. and Mediterraneibacter glycyrrhizinilyticus comb. nov.Togo AH, Diop A, Bittar F, Maraninchi M, Valero R, Armstrong N, Dubourg G, Labas N, Richez M, Delerce J, Levasseur A, Fournier PE, Raoult D, Million MAntonie Van Leeuwenhoek10.1007/s10482-018-1104-y2018Clostridium/classification/genetics, Gastrointestinal Microbiome/*genetics, Humans, Obesity/microbiology, Phenotype, Phylogeny, Ruminococcus/*classification/*genetics, Sequence Analysis, DNAPathogenicity
Phylogeny33986975Mediterraneibacter catenae SW178 sp. nov., an intestinal bacterium of feral chicken.Wongkuna S, Ghimire S, Chankhamhaengdecha S, Janvilisri T, Scaria JPeerJ10.7717/peerj.110502021

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
114463Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID39159.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy