Name: Streptomyces hygroscopicus subsp. hygroscopicus JCM 4092
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164937

Type strain:

Species: Streptomyces hygroscopicus subsp. hygroscopicus

Culture col. no.: JCM 4092, DSM 41599, IFO 16553, NBIMCC 1604, NBRC 16553, NRRL B-1477

Strain history: KCC S-0092 <-- Y. Okami (NIHJ 161) <-- T. Yamaguchi (IAM 0017) <-- NRRL B-1477.

NCBI tax ID(s): 68042 (subspecies)

SI-ID 265317

JCM 4092, DSM 41599, NRRL B-1477, IFO 16553, NBRC 16553, NBIMCC 1604

Other strains from Streptomyces hygroscopicus subsp. hygroscopicus

Section

Streptomyces hygroscopicus subsp. hygroscopicus JCM 4092 is a mesophilic bacterium of the family Streptomycetaceae.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces hygroscopicus subsp. hygroscopicus**
	Full Scientific Name (LPSN)	Streptomyces hygroscopicus subsp. hygroscopicus (Jensen 1931) Yüntsen et al. 1956 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

Production of Nigericin-like antibiotic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #69479]

Global distribution of 16S sequence AJ391819 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	65
Soil Samples	635
Animal Samples	94
Plant Samples	40
Total Samples	834

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces hygroscopicus partial 16S rRNA gene, strain NRRL B-1477	AJ391819	1483	ENA	1912 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces hygroscopicus subsp. hygroscopicus NRRL B-1477	GCA_000721535	contig	GenBank	68042 tax ID

[Ref.: #67770]

GC-content

71.7 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces hygroscopicus subsp. hygroscopicus NRRL B-1477 NCBI: GCA_000721535.1
[Ref.: #69480]	motile	no	93.922	no
[Ref.: #69480]	flagellated	no	97.691	no
[Ref.: #69480]	gram-positive	yes	88.771	no
[Ref.: #69480]	anaerobic	no	99.071	no
[Ref.: #69480]	aerobic	yes	93.793	no
[Ref.: #69480]	halophile	no	89.018	no
[Ref.: #69480]	spore-forming	yes	94.955	no
[Ref.: #69480]	glucose-util	yes	87.726	no
[Ref.: #69480]	thermophile	no	97.557	yes
[Ref.: #69480]	glucose-ferment	no	90.041	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 4092, DSM 41599, IFO 16553, NBIMCC 1604, NBRC 16553, NRRL B-1477

[Ref.: #114343]

SI-ID 265317

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#114343

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265317.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces hygroscopicus subsp. hygroscopicus NRRL B-1477

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