Name: Streptomyces hygroscopicus subsp. hygroscopicus JCM 4885
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 165009

Type strain:

Species: Streptomyces hygroscopicus subsp. hygroscopicus

Culture col. no.: JCM 4885, IFO 16556, NBRC 16556

Strain history: KCC S-0885 <-- Kaken Chem. Co.; A-5294.

NCBI tax ID(s): 68042 (subspecies)

SI-ID 64381

JCM 4885, IFO 16556, NBRC 16556

Other strains from Streptomyces hygroscopicus subsp. hygroscopicus

Section

Streptomyces hygroscopicus subsp. hygroscopicus JCM 4885 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Soil.

Gram-positive
spore-forming
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces hygroscopicus subsp. hygroscopicus**
	Full Scientific Name (LPSN)	Streptomyces hygroscopicus subsp. hygroscopicus (Jensen 1931) Yüntsen et al. 1956 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %90.193

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %100
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Metabolite production	Metabolite	Production
[Ref.: #67770]		vulgamycin	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tottori Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces hygroscopicus subsp. hygroscopicus NBRC 16556	GCA_001553435	scaffold	GenBank	68042 tax ID
[Ref.: #66792]	Streptomyces hygroscopicus subsp. hygroscopicus strain NBRC 16556	68042.5	wgs	PATRIC	68042 tax ID	*
[Ref.: #66792]	Streptomyces hygroscopicus hygroscopicus NBRC 16556	2724679233	draft	JGI IMG/M	68042 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces hygroscopicus subsp. hygroscopicus NBRC 16556 NCBI: GCA_001553435.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces hygroscopicus subsp. hygroscopicus strain NBRC 16556 PATRIC: 68042.5
[Ref.: #69480]	gram-positive	yes	87.844	no
[Ref.: #69480]	anaerobic	no	98.995	no
[Ref.: #69480]	halophile	no	88.537	no
[Ref.: #69480]	spore-forming	yes	94.23	no
[Ref.: #69480]	glucose-util	yes	88.01	no
[Ref.: #69480]	flagellated	no	97.663	no
[Ref.: #69480]	thermophile	no	97.917	no
[Ref.: #69480]	motile	no	94.005	no
[Ref.: #69480]	aerobic	yes	94.656	no
[Ref.: #69480]	glucose-ferment	no	90.533	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 4885, IFO 16556, NBRC 16556

[Ref.: #114364]

SI-ID 64381

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer.	Komaki H, Ichikawa N, Oguchi A, Hamada M, Harunari E, Kodani S, Fujita N, Igarashi Y	Stand Genomic Sci	10.1186/s40793-016-0207-1	2016	*
Genetics	Draft Genome Sequence of Streptomyces hygroscopicus subsp. hygroscopicus NBRC 16556.	Komaki H, Ichikawa N, Oguchi A, Hamada M, Tamura T, Suzuki K, Fujita N	Genome Announc	10.1128/genomeA.00139-16	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#114364

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID64381.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces hygroscopicus subsp. hygroscopicus NBRC 16556

Streptomyces hygroscopicus subsp. hygroscopicus strain NBRC 16556

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