Name: Streptomyces hygroscopicus subsp. hygroscopicus JCM 4885
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 165009

Type strain:

Species: Streptomyces hygroscopicus subsp. hygroscopicus

Culture col. no.: JCM 4885, IFO 16556, NBRC 16556

Strain history: KCC S-0885 <-- Kaken Chem. Co.; A-5294.

NCBI tax ID(s): 68042 (subspecies)

SI-ID 64381

JCM 4885, IFO 16556, NBRC 16556

Special Collections

Other strains from Streptomyces hygroscopicus subsp. hygroscopicus

Section

Streptomyces hygroscopicus subsp. hygroscopicus JCM 4885 is a spore-forming bacterium that was isolated from Soil.

spore-forming
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces hygroscopicus subsp. hygroscopicus**
	Full Scientific Name (LPSN)	Streptomyces hygroscopicus subsp. hygroscopicus (Jensen 1931) Yüntsen et al. 1956 (Approved Lists 1980)

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.048
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Metabolite production	Metabolite	Production
[Ref.: #67770]		vulgamycin	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tottori Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces hygroscopicus subsp. hygroscopicus NBRC 16556	GCA_001553435	scaffold	GenBank ENA	68042 tax ID
[Ref.: #66792]	Streptomyces hygroscopicus subsp. hygroscopicus strain NBRC 16556	68042.5	wgs	PATRIC	68042 tax ID	*
[Ref.: #66792]	Streptomyces hygroscopicus hygroscopicus NBRC 16556	2724679233	draft	JGI IMG/M	68042 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces hygroscopicus subsp. hygroscopicus NBRC 16556 NCBI: GCA_001553435.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces hygroscopicus subsp. hygroscopicus strain NBRC 16556 PATRIC: 68042.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	85.285	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.832	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.048	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	85.84	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.5	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 4885, IFO 16556, NBRC 16556

[Ref.: #114364]

SI-ID 64381

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence of Streptomyces sp. TP-A0867, an alchivemycin producer.	Komaki H, Ichikawa N, Oguchi A, Hamada M, Harunari E, Kodani S, Fujita N, Igarashi Y	Stand Genomic Sci	10.1186/s40793-016-0207-1	2016	*
Genetics	Draft Genome Sequence of Streptomyces hygroscopicus subsp. hygroscopicus NBRC 16556.	Komaki H, Ichikawa N, Oguchi A, Hamada M, Tamura T, Suzuki K, Fujita N	Genome Announc	10.1128/genomeA.00139-16	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#114364

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID64381.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces hygroscopicus subsp. hygroscopicus NBRC 16556

Streptomyces hygroscopicus subsp. hygroscopicus strain NBRC 16556

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