Koleobacter methoxysyntrophicus (JCM 39120)

Name: Koleobacter methoxysyntrophicus (JCM 39120)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164870

Type strain

Culture col. no. JCM 39120

NCBI tax ID(s) 2751313

Special Collections JCM

History JCM <-- H. Tamaki; AIST, Japan; NRmbB1.

Links

Koleobacter methoxysyntrophicus JCM 39120 is a bacterium that was isolated from Formation water in a deep subsurface oil reservoir.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 27810

KCTC 25035,JCM 39120

@ref 20215

Last LPSN update 2026-05-29 08:45:31

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Koleobacterales

Family Koleobacteraceae

Genus Koleobacter

Species Koleobacter methoxysyntrophicus

Full scientific name Koleobacter methoxysyntrophicus Sakamoto et al. 2021

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	55

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	anaerobe	99.919

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Formation water in a deep subsurface oil reservoir	Yamagata	Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1730161v1 assembly for Koleobacter methoxysyntrophicus NRmbB1	complete	GCA_017301615	2751313.3	8001216229	2751313	97.37

GC content

67770

GC-content (mol%)40.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1730161v1 assembly for Koleobacter methoxysyntrophicus NRmbB1
NCBI: GCA_017301615

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.92	no
125439	motility	BacteriaNetⓘ	yes	55.60	no
125439	gram_stain	BacteriaNetⓘ	variable	53.68	no
125439	spore_formation	BacteriaNetⓘ	yes	55.15	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Koleobacter methoxysyntrophicus gen. nov., sp. nov., a novel anaerobic bacterium isolated from deep subsurface oil field and proposal of Koleobacteraceae fam. nov. and Koleobacterales ord. nov. within the class Clostridia of the phylum Firmicutes.	Sakamoto S, Nobu MK, Mayumi D, Tamazawa S, Kusada H, Yonebayashi H, Iwama H, Ikarashi M, Wakayama T, Maeda H, Sakata S, Tamura T, Nomura N, Kamagata Y, Tamaki H	Syst Appl Microbiol	10.1016/j.syapm.2020.126154	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Koleobacter methoxysyntrophicus (JCM 39120)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_017301615

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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