Strain identifier

BacDive ID: 164870

Type strain: Yes

Species: Koleobacter methoxysyntrophicus

Strain history: H. Tamaki; AIST, Japan; NRmbB1.

NCBI tax ID(s): 2751313 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 164870

keywords: genome sequence, Bacteria, thermophilic

description: Koleobacter methoxysyntrophicus JCM 39120 is a thermophilic bacterium that was isolated from Formation water in a deep subsurface oil reservoir.

NCBI tax id

  • NCBI tax id: 2751313
  • Matching level: species

strain history

  • @ref: 67770
  • history: H. Tamaki; AIST, Japan; NRmbB1.

doi: 10.13145/bacdive164870.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Koleobacterales
  • family: Koleobacteraceae
  • genus: Koleobacter
  • species: Koleobacter methoxysyntrophicus
  • full scientific name: Koleobacter methoxysyntrophicus Sakamoto et al. 2021

@ref: 67770

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Koleobacterales

family: Koleobacteraceae

genus: Koleobacter

species: Koleobacter methoxysyntrophicus

full scientific name: Koleobacter methoxysyntrophicus Sakamoto et al.

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 55
  • range: thermophilic

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Formation water in a deep subsurface oil reservoir
  • geographic location: Yamagata
  • country: Japan
  • origin.country: JPN
  • continent: Asia

Sequence information

Genome sequences

  • @ref: 67770
  • description: Koleobacter methoxysyntrophicus NRmbB1
  • accession: GCA_017301615
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 2751313

GC content

  • @ref: 67770
  • GC-content: 40.8

External links

@ref: 67770

culture collection no.: JCM 39120

literature

  • topic: Phylogeny
  • Pubmed-ID: 33227632
  • title: Koleobacter methoxysyntrophicus gen. nov., sp. nov., a novel anaerobic bacterium isolated from deep subsurface oil field and proposal of Koleobacteraceae fam. nov. and Koleobacterales ord. nov. within the class Clostridia of the phylum Firmicutes.
  • authors: Sakamoto S, Nobu MK, Mayumi D, Tamazawa S, Kusada H, Yonebayashi H, Iwama H, Ikarashi M, Wakayama T, Maeda H, Sakata S, Tamura T, Nomura N, Kamagata Y, Tamaki H
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2020.126154
  • year: 2020
  • mesh: Bacterial Typing Techniques, Base Composition, Clostridiales/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Oil and Gas Fields/*microbiology, *Phylogeny, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/