Strain identifier
BacDive ID: 164870
Type strain:
Species: Koleobacter methoxysyntrophicus
Strain history: H. Tamaki; AIST, Japan; NRmbB1.
NCBI tax ID(s): 2751313 (species)
version 8.1 (current version)
General
@ref: 67770
BacDive-ID: 164870
keywords: genome sequence, Bacteria, thermophilic
description: Koleobacter methoxysyntrophicus JCM 39120 is a thermophilic bacterium that was isolated from Formation water in a deep subsurface oil reservoir.
NCBI tax id
- NCBI tax id: 2751313
- Matching level: species
strain history
- @ref: 67770
- history: H. Tamaki; AIST, Japan; NRmbB1.
doi: 10.13145/bacdive164870.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Koleobacterales
- family: Koleobacteraceae
- genus: Koleobacter
- species: Koleobacter methoxysyntrophicus
- full scientific name: Koleobacter methoxysyntrophicus Sakamoto et al. 2021
@ref: 67770
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Koleobacterales
family: Koleobacteraceae
genus: Koleobacter
species: Koleobacter methoxysyntrophicus
full scientific name: Koleobacter methoxysyntrophicus Sakamoto et al.
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 55
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Formation water in a deep subsurface oil reservoir
- geographic location: Yamagata
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
Genome sequences
- @ref: 67770
- description: Koleobacter methoxysyntrophicus NRmbB1
- accession: GCA_017301615
- assembly level: complete
- database: ncbi
- NCBI tax ID: 2751313
GC content
- @ref: 67770
- GC-content: 40.8
External links
@ref: 67770
culture collection no.: JCM 39120
literature
- topic: Phylogeny
- Pubmed-ID: 33227632
- title: Koleobacter methoxysyntrophicus gen. nov., sp. nov., a novel anaerobic bacterium isolated from deep subsurface oil field and proposal of Koleobacteraceae fam. nov. and Koleobacterales ord. nov. within the class Clostridia of the phylum Firmicutes.
- authors: Sakamoto S, Nobu MK, Mayumi D, Tamazawa S, Kusada H, Yonebayashi H, Iwama H, Ikarashi M, Wakayama T, Maeda H, Sakata S, Tamura T, Nomura N, Kamagata Y, Tamaki H
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2020.126154
- year: 2020
- mesh: Bacterial Typing Techniques, Base Composition, Clostridiales/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Japan, Oil and Gas Fields/*microbiology, *Phylogeny, Sequence Analysis, DNA
- topic2: Transcriptome
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |