Cite this strain

Budvicia aquatica (JCM 3902)

Name: Budvicia aquatica (JCM 3902)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164865

Type strain

Culture col. no. JCM 3902

NCBI tax ID(s) 82979

Special Collections JCM

Links

Budvicia aquatica JCM 3902 is a mesophilic prokaryote of the family Budviciaceae.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 1364

LMG 8813,ATCC 35567,CIP 103240,DSM 5075,JCM 3902,CNCTC 20186,CCUG 21129,NCIMB 13182,CNCTC 350,NCTC 12282,CNCTC 6285

@ref 20215

Last LPSN update 2025-12-16 10:09:33

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Budviciaceae

Genus Budvicia

Species Budvicia aquatica

Full scientific name Budvicia aquatica Bouvet et al. 1985

Synonyms (1)

Budvicia aquatica

BacDive ID	Other strains from **Budvicia aquatica** (12)	Type strain
4310	B. aquatica 20186HG01, M350, Eb 13/82, aldova 20 186HGO1, ... (type strain)
142748	B. aquatica CCUG 14427
142749	B. aquatica CCUG 14428
143708	B. aquatica CCUG 21129
143709	B. aquatica CCUG 21130
143710	B. aquatica CCUG 21131
143711	B. aquatica CCUG 21132
144159	B. aquatica CCUG 23262
144160	B. aquatica CCUG 23263
144168	B. aquatica CCUG 23272
144169	B. aquatica CCUG 23273, NRL 23269
144170	B. aquatica CCUG 23274, NRL Prague 23273

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.7
125438	negative	97.944

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.1

Spore formation

@ref	Spore formation	Confidence
125439		99.3

Isolation, sampling and environmental information

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM2434353v1 assembly for Budvicia aquatica JCM 3902	contig	GCA_024343535	82979.6	82979	64.56

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Budvicia aquatica JCM 3902 gene for 16S ribosomal RNA, partial sequence	LC420096	1465		82979

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Budvicia aquatica JCM3902
NCBI: GCA_024343535

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.30	no
125439	motility	BacteriaNetⓘ	yes	80.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Budvicia aquatica JCM3902
NCBI: GCA_024343535.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.94	no
125438	anaerobic	anaerobicⓘ	no	89.37	no
125438	aerobic	aerobicⓘ	no	66.99	no
125438	spore-forming	spore-formingⓘ	no	85.36	no
125438	thermophilic	thermophileⓘ	no	98.28	yes
125438	flagellated	motile2+ⓘ	yes	52.86	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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