Strain identifier
BacDive ID: 164865
Type strain: 
Species: Budvicia aquatica
Strain history: Y. Kosako 85537 <-- P. A. D. Grimont 20186HGa.
NCBI tax ID(s): 82979 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 164865
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Budvicia aquatica JCM 3902 is a Gram-negative bacterium of the family Budviciaceae.
NCBI tax id
- NCBI tax id: 82979
- Matching level: species
strain history
- @ref: 67770
- history: Y. Kosako 85537 <-- P. A. D. Grimont 20186HGa.
doi: 10.13145/bacdive164865.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Budviciaceae
- genus: Budvicia
- species: Budvicia aquatica
- full scientific name: Budvicia aquatica Bouvet et al. 1985
synonyms
- @ref: 20215
- synonym: Budvicia aquatica
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacterales
family: Budviciaceae
genus: Budvicia
species: Budvicia aquatica
full scientific name: Budvicia aquatica Bouvet et al. 1985
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 97.944
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Sequence information
16S sequences
- @ref: 67770
- description: Budvicia aquatica JCM 3902 gene for 16S ribosomal RNA, partial sequence
- accession: LC420096
- length: 1465
- database: nuccore
- NCBI tax ID: 82979
Genome sequences
- @ref: 66792
- description: Budvicia aquatica JCM3902
- accession: GCA_024343535
- assembly level: contig
- database: ncbi
- NCBI tax ID: 82979
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.944 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 89.374 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 66.985 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 85.364 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98.282 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 52.863 | no |
External links
@ref: 67770
culture collection no.: JCM 3902
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |