Budvicia aquatica (DSM 5075, 20186HG01, ATCC 35567)

Name: Budvicia aquatica (DSM 5075, 20186HG01, ATCC 35567)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 4310

Type strain

Strain Designation 20186HG01, M350, Eb 13/82, aldova 20 186HGO1

Culture col. no. DSM 5075 20186HG01 ATCC 35567 CNCTC 20186 M350 5 more

NCBI tax ID(s) 1111728 82979

Special Collections DSMZ CCUG CIP

Links

Budvicia aquatica 20186HG01 is a mesophilic prokaryote that was isolated from drinking water.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 1364

LMG 8813,ATCC 35567,CIP 103240,DSM 5075,JCM 3902,CNCTC 20186,CCUG 21129,NCIMB 13182,CNCTC 350,NCTC 12282,CNCTC 6285

@ref 20215

Last LPSN update 2025-12-16 09:47:47

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Budviciaceae

Genus Budvicia

Species Budvicia aquatica

Full scientific name Budvicia aquatica Bouvet et al. 1985

Synonyms (1)

Budvicia aquatica

BacDive ID	Other strains from **Budvicia aquatica** (12)	Type strain
142748	B. aquatica CCUG 14427
142749	B. aquatica CCUG 14428
143708	B. aquatica CCUG 21129
143709	B. aquatica CCUG 21130
143710	B. aquatica CCUG 21131
143711	B. aquatica CCUG 21132
144159	B. aquatica CCUG 23262
144160	B. aquatica CCUG 23263
144168	B. aquatica CCUG 23272
144169	B. aquatica CCUG 23273, NRL 23269
144170	B. aquatica CCUG 23274, NRL Prague 23273
164865	B. aquatica JCM 3902

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	97.427
125439	negative	99.6

Multimedia

@ref:	66793
multimedia content:	EM_DSM_5075_1.jpg
multimedia.multimedia content:	EM_DSM_5075_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_5075_2.jpg
multimedia.multimedia content:	EM_DSM_5075_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_5075_3.jpg
multimedia.multimedia content:	EM_DSM_5075_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_5075_4.jpg
multimedia.multimedia content:	EM_DSM_5075_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_5075_5.jpg
multimedia.multimedia content:	EM_DSM_5075_5.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1922	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)	Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
40577	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
116429	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
1922	positive	growth	26	mesophilic
40577	positive	growth	22	psychrophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.7

Spore formation

@ref	Spore formation	Confidence
125439		99.5

Compound production

1922

Compoundhydrogen sulfide

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68368	15688 ChEBI	acetoin	-	from API 20E
68368	35581 ChEBI	indole		from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	gluconeogenesis	100	8 of 8
66794	palmitate biosynthesis	100	22 of 22
66794	Entner Doudoroff pathway	100	10 of 10
66794	L-lactaldehyde degradation	100	3 of 3
66794	sulfopterin metabolism	100	4 of 4
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	threonine metabolism	100	10 of 10
66794	vitamin K metabolism	100	5 of 5
66794	aminopropanol phosphate biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	ubiquinone biosynthesis	100	7 of 7
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	valine metabolism	100	9 of 9
66794	ketogluconate metabolism	100	8 of 8
66794	sulfoquinovose degradation	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	lipoate biosynthesis	100	5 of 5
66794	suberin monomers biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	heme metabolism	92.86	13 of 14
66794	photosynthesis	92.86	13 of 14
66794	vitamin B6 metabolism	90.91	10 of 11
66794	pentose phosphate pathway	90.91	10 of 11
66794	4-hydroxyphenylacetate degradation	90	9 of 10
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	citric acid cycle	85.71	12 of 14
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	glutathione metabolism	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	vitamin B1 metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	purine metabolism	81.91	77 of 94
66794	proline metabolism	81.82	9 of 11
66794	pyrimidine metabolism	80	36 of 45
66794	degradation of sugar acids	80	20 of 25
66794	starch degradation	80	8 of 10
66794	gallate degradation	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	vitamin B12 metabolism	79.41	27 of 34
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	lipid A biosynthesis	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	glycolysis	76.47	13 of 17
66794	butanoate fermentation	75	3 of 4
66794	degradation of sugar alcohols	75	12 of 16
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	biotin biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	degradation of pentoses	75	21 of 28
66794	flavin biosynthesis	73.33	11 of 15
66794	degradation of hexoses	72.22	13 of 18
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	urea cycle	69.23	9 of 13
66794	alanine metabolism	68.97	20 of 29
66794	ascorbate metabolism	68.18	15 of 22
66794	oxidative phosphorylation	68.13	62 of 91
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	enterobactin biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	phenol degradation	65	13 of 20
66794	carnitine metabolism	62.5	5 of 8
66794	leucine metabolism	61.54	8 of 13
66794	cysteine metabolism	61.11	11 of 18
66794	non-pathway related	60.53	23 of 38
66794	glycogen metabolism	60	3 of 5
66794	cellulose degradation	60	3 of 5
66794	hydrogen production	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	lysine metabolism	59.52	25 of 42
66794	histidine metabolism	58.62	17 of 29
66794	tryptophan metabolism	57.89	22 of 38
66794	methionine metabolism	57.69	15 of 26
66794	tyrosine metabolism	57.14	8 of 14
66794	4-hydroxymandelate degradation	55.56	5 of 9
66794	CO2 fixation in Crenarchaeota	55.56	5 of 9
66794	d-mannose degradation	55.56	5 of 9
66794	allantoin degradation	55.56	5 of 9
66794	arginine metabolism	54.17	13 of 24
66794	lipid metabolism	51.61	16 of 31
66794	coenzyme M biosynthesis	50	5 of 10
66794	glycine metabolism	50	5 of 10
66794	androgen and estrogen metabolism	50	8 of 16
66794	ribulose monophosphate pathway	50	1 of 2
66794	propionate fermentation	50	5 of 10
66794	pantothenate biosynthesis	50	3 of 6
66794	toluene degradation	50	2 of 4
66794	lactate fermentation	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	ethanol fermentation	50	1 of 2
66794	adipate degradation	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	sulfate reduction	46.15	6 of 13
66794	nitrate assimilation	44.44	4 of 9
66794	arachidonate biosynthesis	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	O-antigen biosynthesis	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	d-xylose degradation	36.36	4 of 11
66794	polyamine pathway	34.78	8 of 23
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	myo-inositol biosynthesis	30	3 of 10
66794	arachidonic acid metabolism	27.78	5 of 18
66794	metabolism of disaccharids	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
1922	+	-	-	-	-	+	+	-	-	-	-	+	+	-	-	+	-	-	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater

Isolation

@ref	Sample type
1922	drinking water
116429	Environment, Water

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1922	1	Risk group (German classification) According to TRBA 466
116429	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM42780v1 assembly for Budvicia aquatica DSM 5075 = ATCC 35567	scaffold	GCA_000427805	1111728.3	2513237113	1111728	48.14

Genome browser: GCA_000427805

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Budvicia aquatica 16S rRNA gene (strain DSM 5075)	AJ233407	1481		1111728

GC content

1922

GC-content (mol%)46.0

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Budvicia aquatica DSM 5075 = ATCC 35567
NCBI: GCA_000427805

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.50	no
125439	motility	BacteriaNetⓘ	yes	76.50	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Budvicia aquatica DSM 5075 = ATCC 35567 DSM 5075
NCBI: GCA_000427805.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.43	no
125438	anaerobic	anaerobicⓘ	no	89.43	no
125438	aerobic	aerobicⓘ	no	65.23	no
125438	spore-forming	spore-formingⓘ	no	84.21	no
125438	thermophilic	thermophileⓘ	no	98.28	yes
125438	flagellated	motile2+ⓘ	yes	52.89	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Identification of gene targets regulated by the IclR-like regulator SL1344_3500 in Salmonella Typhimurium.	Andersen TB, Napflin N, Santamaria de Souza N, Schubert C, Nguyen BD.	J Bacteriol	10.1128/jb.00054-25	2025
	Luteimonas wenzhouensis Sp. Nov., A Chitinolytic Bacterium Isolated from a Landfill Soil.	Zhou J, Chen J, Ma J, Xu N, Xin F, Zhang W, Zhang H, Dong W, Jiang M.	Curr Microbiol	10.1007/s00284-020-02293-9	2021
Enzymology	Multiplex detection of nine food-borne pathogens by mPCR and capillary electrophoresis after using a universal pre-enrichment medium.	Villamizar-Rodriguez G, Fernandez J, Marin L, Muniz J, Gonzalez I, Lombo F.	Front Microbiol	10.3389/fmicb.2015.01194	2015
Enzymology	Molecular method for detection of total coliforms in drinking water samples.	Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ.	Appl Environ Microbiol	10.1128/aem.00546-14	2014
Phylogeny	Budvicia diplopodorum sp. nov. and emended description of the genus Budvicia.	Lang E, Schumann P, Knapp BA, Kumar R, Sproer C, Insam H	Int J Syst Evol Microbiol	10.1099/ijs.0.036749-0	2012

References

#1922	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5075
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#40577	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68368	Automatically annotated from API 20E .
#116429	Collection of Institut Pasteur ; Curators of the CIP; CIP 103240
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Budvicia aquatica (DSM 5075, 20186HG01, ATCC 35567)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000427805

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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