Name: Streptomyces spongiae Sp080513SC-24
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 16484

Type strain:

Species: Streptomyces spongiae

Strain Designation: Sp080513SC-24

Culture col. no.: DSM 42031, NBRC 106415

Strain history: <- T. Tamura, NBRC; NBRC 106415 <- S. T. Khan; Sp080513SC-24

NCBI tax ID(s): 565072 (species)

SI-ID 404610

DSM 42031

Section

Streptomyces spongiae Sp080513SC-24 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from marine sponge, Haliclona sp..

Gram-positive
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces spongiae**
	Full Scientific Name (LPSN)	Streptomyces spongiae Khan et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17547]

Culture medium

YEAST EXTRACT-STARCH AGAR(50% MARINE WATER) (DSMZ Medium 1274)

[Ref.: #17547]

Culture medium growth

[Ref.: #17547]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17547]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17547]			growth	28 °C

[Ref.: #17547]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17547]	Sample type/isolated from	marine sponge, Haliclona sp.
[Ref.: #17547]	Host species	Haliclona
[Ref.: #17547]	Geographic location (country and/or sea, region)	Chiba, Tateyama
[Ref.: #17547]	Country	Japan
[Ref.: #17547]	Country ISO 3 Code	JPN
[Ref.: #17547]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Porifera (Sponges)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17547]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17547]	Streptomyces spongiae gene for 16S rRNA, partial sequence	AB498741	1472	ENA	565072 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces spongiae NBRC 106415	GCA_009377185	contig	GenBank	565072 tax ID	*
[Ref.: #66792]	Streptomyces spongiae strain NBRC 106415	565072.3	wgs	PATRIC	565072 tax ID	*

[Ref.: #17547]

GC-content

72 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Streptomyces spongiae strain NBRC 106415 PATRIC: 565072.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces spongiae strain NBRC 106415 PATRIC: 565072.3
[Ref.: #69480]	gram-positive	yes	84.931	no
[Ref.: #69480]	anaerobic	no	98.888	no
[Ref.: #69480]	halophile	no	93.382	no
[Ref.: #69480]	spore-forming	yes	93.559	no
[Ref.: #69480]	glucose-util	yes	89.979	no
[Ref.: #69480]	thermophile	no	97.994	no
[Ref.: #69480]	flagellated	no	98.1	no
[Ref.: #69480]	motile	no	94.722	no
[Ref.: #69480]	aerobic	yes	92.953	no
[Ref.: #69480]	glucose-ferment	no	88.636	no

Availability in culture collections External links

[Ref.: #17547]

Culture collection no.

DSM 42031, NBRC 106415

[Ref.: #85519]

SI-ID 404610

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces acidicola sp. nov., isolated from a peat swamp forest in Thailand.	Lipun K, Chantavorakit T, Mingma R, Duangmal K	J Antibiot (Tokyo)	10.1038/s41429-020-0294-5	2020	*

References

#17547

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42031

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#85519

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404610.1 )

* These data were automatically processed and therefore are not curated

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Streptomyces spongiae strain NBRC 106415

Streptomyces spongiae strain NBRC 106415

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