Name: Streptomyces coacervatus AS-0823
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16479

Type strain:

Species: Streptomyces coacervatus

Strain Designation: AS-0823

Culture col. no.: DSM 41983, IFM 11055, JCM 17138

Strain history: A. Shibazaki AS-0823.

NCBI tax ID(s): 647381 (species)

SI-ID 407645

DSM 41983

Special Collections

Section

Streptomyces coacervatus AS-0823 is an aerobe, spore-forming, Gram-positive bacterium that builds an aerial mycelium and was isolated from intestinal tract of the common pill woodlouse Armadillidium vulgare.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces coacervatus**
	Full Scientific Name (LPSN)	Streptomyces coacervatus Shibazaki et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #29705]	Gram stain	positive

[Ref.: #69480]	Motility	no Confidence in %90.5

[Ref.: #21419]	Colony color	Green beige (1000)
[Ref.: #21419]	Incubation period	10-14 days
[Ref.: #21419]	Cultivation medium used	ISP 2

[Ref.: #21419]	Colony color	Pale brown (8025)/ Sand yellow (1002)
[Ref.: #21419]	Incubation period	10-14 days
[Ref.: #21419]	Cultivation medium used	ISP 3

[Ref.: #21419]	Colony color	Ivory (1014)
[Ref.: #21419]	Incubation period	10-14 days
[Ref.: #21419]	Cultivation medium used	ISP 4

[Ref.: #21419]	Colony color	Ivory (1014)/ Pebble grey (7032)
[Ref.: #21419]	Incubation period	10-14 days
[Ref.: #21419]	Cultivation medium used	ISP 5

[Ref.: #21419]	Colony color	Khaki grey (7008)
[Ref.: #21419]	Incubation period	10-14 days
[Ref.: #21419]	Cultivation medium used	ISP 7

[Ref.: #21419]	Colony color	Sand yellow (1002)
[Ref.: #21419]	Incubation period	10-14 days
[Ref.: #21419]	Cultivation medium used	Suter with tyrosine

[Ref.: #21419]	Colony color	Sand yellow (1002)/ Clay brown (8003)
[Ref.: #21419]	Incubation period	10-14 days
[Ref.: #21419]	Cultivation medium used	Suter without tyrosine

[Ref.: #29705]

Pigment production

[Ref.: #21419]	Multicellular complex forming ability	yes
[Ref.: #21419]	Multicellular complex name	Aerial Mycelium
[Ref.: #21419]	Multicellular complex color	Signal white (9003)
[Ref.: #21419]	Medium Name (multicellularity)	ISP 2

[Ref.: #21419]	Multicellular complex forming ability	yes
[Ref.: #21419]	Multicellular complex name	Aerial Mycelium
[Ref.: #21419]	Multicellular complex color	Pure white (9010)
[Ref.: #21419]	Medium Name (multicellularity)	ISP 3

[Ref.: #21419]	Multicellular complex forming ability	no
[Ref.: #21419]	Medium Name (multicellularity)	ISP 4

[Ref.: #21419]	Multicellular complex forming ability	yes
[Ref.: #21419]	Multicellular complex name	Aerial Mycelium
[Ref.: #21419]	Multicellular complex color	Signal white (9003)
[Ref.: #21419]	Medium Name (multicellularity)	ISP 5

[Ref.: #21419]	Multicellular complex forming ability	yes
[Ref.: #21419]	Multicellular complex name	Aerial Mycelium
[Ref.: #21419]	Multicellular complex color	Signal white (9003)
[Ref.: #21419]	Medium Name (multicellularity)	ISP 7

[Ref.: #21419]	Multicellular complex forming ability	yes
[Ref.: #21419]	Multicellular complex name	Aerial Mycelium
[Ref.: #21419]	Medium Name (multicellularity)	Suter with tyrosine

[Ref.: #21419]	Multicellular complex forming ability	yes
[Ref.: #21419]	Multicellular complex name	Aerial Mycelium
[Ref.: #21419]	Medium Name (multicellularity)	Suter without tyrosine

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16594]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #16594]

Culture medium growth

[Ref.: #16594]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16594]

Culture medium composition

expand / minimize

[Ref.: #21419]

Culture medium

ISP 2

[Ref.: #21419]

Culture medium growth

[Ref.: #21419]

Culture medium composition

expand / minimize

[Ref.: #21419]

Culture medium

ISP 3

[Ref.: #21419]

Culture medium growth

[Ref.: #21419]

Culture medium composition

expand / minimize

[Ref.: #21419]

Culture medium

ISP 4

[Ref.: #21419]

Culture medium growth

[Ref.: #21419]

Culture medium composition

expand / minimize

[Ref.: #21419]

Culture medium

ISP 5

[Ref.: #21419]

Culture medium growth

[Ref.: #21419]

Culture medium composition

expand / minimize

[Ref.: #21419]

Culture medium

ISP 7

[Ref.: #21419]

Culture medium growth

[Ref.: #21419]

Culture medium composition

expand / minimize

[Ref.: #21419]

Culture medium

Suter with tyrosine

[Ref.: #21419]

Culture medium growth

[Ref.: #21419]

Culture medium composition

expand / minimize

[Ref.: #21419]

Culture medium

Suter without tyrosine

[Ref.: #21419]

Culture medium growth

[Ref.: #21419]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16594]	growth	28 °C
[Ref.: #29705]	growth	10-37 °C
[Ref.: #29705]	optimum	23.5 °C
[Ref.: #67770]	growth	28 °C

	pH	Kind of pH		pH
[Ref.: #29705]			optimum	7.5
[Ref.: #29705]			growth	06-09

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29705]

Oxygen tolerance

aerobe

[Ref.: #29705]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #21419]		NaCl		maximum	10	%
[Ref.: #29705]		NaCl		growth	<4	%

[Ref.: #29705]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #21419]	arabinose ChEBI	+
[Ref.: #29705]	arabinose ChEBI	+	carbon source
[Ref.: #29705]	asparagine ChEBI	+	carbon source
[Ref.: #21419]	cellulose ChEBI	-
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #21419]	fructose ChEBI	+
[Ref.: #29705]	fructose ChEBI	+	carbon source
[Ref.: #29705]	gelatin ChEBI	+	carbon source
[Ref.: #68379]	gelatin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #21419]	glucose ChEBI	+
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #29705]	mannitol ChEBI	+	carbon source
[Ref.: #21419]	mannose ChEBI	+
[Ref.: #21419]	myo-inositol ChEBI	+
[Ref.: #29705]	myo-inositol ChEBI	+	carbon source
[Ref.: #29705]	nitrate ChEBI	+	reduction
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #21419]	raffinose ChEBI	+
[Ref.: #29705]	raffinose ChEBI	+	carbon source
[Ref.: #21419]	rhamnose ChEBI	+
[Ref.: #29705]	rhamnose ChEBI	+	carbon source
[Ref.: #21419]	sucrose ChEBI	+
[Ref.: #29705]	sucrose ChEBI	+	carbon source
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #21419]	xylose ChEBI	+
[Ref.: #29705]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68379]	alpha-glucosidase	+	3.2.1.20	* from API Coryne, API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #29705]	gelatinase	+
[Ref.: #68379]	gelatinase	-		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #21419]	536	-	-	-	+/-	-	+	+	-	+	-	-	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #21419]	1056	not determinedn.d.	+	+	+	-	+	-	-	-	-	+	+	+	+	-	+	+	+	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16594]	Sample type/isolated from	intestinal tract of the common pill woodlouse Armadillidium vulgare
[Ref.: #16594]	Host species	Armadillidium vulgare
[Ref.: #16594]	Geographic location (country and/or sea, region)	Chiba City
[Ref.: #16594]	Country	Japan
[Ref.: #16594]	Country ISO 3 Code	JPN
[Ref.: #16594]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Intestinal tract of Armadillidium vulgare
[Ref.: #67770]	Host species	Armadillidium vulgare
[Ref.: #67770]	Geographic location (country and/or sea, region)	Chiba City
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Arthropoda	#Crustacea
#Host Body-Site	#Gastrointestinal tract	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16594]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #21419]	Biosafety level	L1	German classification

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16594]	Streptomyces coacervatus gene for 16S ribosomal RNA, partial sequence	AB500703	1496	GenBank ENA	647381 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Streptomyces coacervatus JCM 17138	GCA_029223485	contig	GenBank ENA	647381 tax ID	*

[Ref.: #16594]	GC-content	73.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29705]	GC-content	73.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces coacervatus JCM 17138 NCBI: GCA_029223485.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	83.595	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	80.794	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	53.338	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	60.127	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	91.167	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	90.5	no

Availability in culture collections External links

[Ref.: #16594]

Culture collection no.

DSM 41983, IFM 11055, JCM 17138

[Ref.: #85514]

SI-ID 407645

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces montanus sp. nov., a novel actinomycete isolated from soil.	Jiang H, Han L, Li J, Yu M, Zhao J, Guo X, Xiang W, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.004160	2020	*
Phylogeny	Streptomyces monashensis sp. nov., a novel mangrove soil actinobacterium from East Malaysia with antioxidative potential.	Law JW, Ser HL, Ab Mutalib NS, Saokaew S, Duangjai A, Khan TM, Chan KG, Goh BH, Lee LH	Sci Rep	10.1038/s41598-019-39592-6	2019	*
Phylogeny	Streptomyces coacervatus sp. nov., isolated from the intestinal tract of Armadillidium vulgare.	Shibazaki A, Omoto Y, Kudo T, Yaguchi T, Saito A, Ando A, Mikami Y, Gonoi T	Int J Syst Evol Microbiol	10.1099/ijs.0.019091-0	2010	*

References

#16594

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41983

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#21419

Wink, J.: Compendium of Actinobacteria . HZI-Helmholtz-Centre for Infection Research, Braunschweig .

#29705

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26088 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#85514

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407645.1 )

#26088

IJSEM 1073 2011 ( DOI 10.1099/ijs.0.019091-0 , PubMed 20525817 )

* These data were automatically processed and therefore are not curated

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Streptomyces coacervatus JCM 17138

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