Name: Flavihumibacter soli R14
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164573

Type strain:

Species: Flavihumibacter soli

Strain Designation: R14

Culture col. no.: JCM 33473, KACC 21229

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; R14.

NCBI tax ID(s): 2705549 (species)

Special Collections

Section

Flavihumibacter soli R14 is an obligate aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from Soil in Seoul.

colony-forming
Gram-positive
rod-shaped
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Flavihumibacter*
	Species	**Flavihumibacter soli**
	Full Scientific Name (LPSN)	Flavihumibacter soli Seo et al. 2021

Information on morphological and physiological properties Morphology

[Ref.: #68307]	Gram stain	positive

[Ref.: #68307]	Cell length	1.8-2.3 µm

[Ref.: #68307]	Cell width	0.4-0.5 µm

[Ref.: #68307]	Cell shape	rod-shaped

[Ref.: #68307]	Motility	no

[Ref.: #68307]	Colony color	yellow
[Ref.: #68307]	Colony shape	circular
[Ref.: #68307]	Cultivation medium used	Reasoner's 2A agar (R2A)

[Ref.: #68307]	Pigment production	yes
[Ref.: #68307]	Pigment name	Flexirubin type pigments

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	30 °C
[Ref.: #68307]	growth	25-37 °C
[Ref.: #68307]	optimum	30 °C

	pH	Kind of pH		pH
[Ref.: #68307]			optimum	6.5
[Ref.: #68307]			growth	5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68307]

Oxygen tolerance

obligate aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68307]		NaCl		growth	0-0.5	%(w/v)
[Ref.: #68307]		NaCl		optimum	0	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68307]	casein	-	hydrolysis
[Ref.: #68307]	D-glucose ChEBI	+	assimilation
[Ref.: #68307]	esculin ChEBI	-	hydrolysis
[Ref.: #68307]	gelatin ChEBI	-	hydrolysis
[Ref.: #68307]	nitrate ChEBI	-	reduction
[Ref.: #68307]	starch ChEBI	+	hydrolysis
[Ref.: #68307]	tween 20 ChEBI	-	hydrolysis
[Ref.: #68307]	tween 80 ChEBI	+	hydrolysis
[Ref.: #68307]	tyrosine ChEBI	-	hydrolysis
[Ref.: #68307]	urea ChEBI	+	hydrolysis

	Metabolite production	Metabolite	Production
[Ref.: #68307]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68307]	acid phosphatase	+	3.1.3.2
[Ref.: #68307]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68307]	alpha-fucosidase	+	3.2.1.51
[Ref.: #68307]	alpha-galactosidase	+	3.2.1.22
[Ref.: #68307]	alpha-glucosidase	+	3.2.1.20
[Ref.: #68307]	beta-glucuronidase	+	3.2.1.31
[Ref.: #68307]	catalase	+	1.11.1.6
[Ref.: #68307]	cystine arylamidase	+	3.4.11.3
[Ref.: #68307]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68307]	esterase (C 4)	+
[Ref.: #68307]	esterase Lipase (C 8)	+
[Ref.: #68307]	leucine arylamidase	+	3.4.11.1
[Ref.: #68307]	lipase (C 14)	+
[Ref.: #68307]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #68307]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #68307]	urease	+	3.5.1.5
[Ref.: #68307]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68307]

Fatty acid	Percentage
C15:0 iso	39.5
C17:0 iso 3OH	16.9
C16:0	8
C15:1 w6c	7.3
C15:0 iso G	6.9
C16:1 w5c	4.4
C15:0 anteiso	4.1
C17:0 iso	2.9
C15:0 iso 3OH	2.6
C18:0	2.3
C16:0 3OH	1.9
C16:1 w7c/C16:1 w6c	1.7
C12:0	1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil in Seoul
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #68307]	Sample type/isolated from	soil
[Ref.: #68307]	Geographic location (country and/or sea, region)	Seoul
[Ref.: #68307]	Country	Republic of Korea
[Ref.: #68307]	Country ISO 3 Code	KOR
[Ref.: #68307]	Continent	Asia
[Ref.: #68307]	Geographic location	37.5054°/126.9570°
[Ref.: #68307]	Enrichment culture	R2A agar
[Ref.: #68307]	Enrichment culture duration	3 days
[Ref.: #68307]	Enrichment culture temperature	30 ̊C
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Flavihumibacter soli strain R14 16S ribosomal RNA gene, partial sequence	MN086351	1460	GenBank ENA	2705549 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Flavihumibacter soli R14	GCA_010692725	contig	GenBank ENA	2705549 tax ID
[Ref.: #66792]	Flavihumibacter soli R14	2890264764	draft	JGI IMG/M	2705549 tax ID	*

[Ref.: #68307]

GC-content

44.6 mol%

genome sequence analysis

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33473, KACC 21229

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavihumibacter soli sp. nov., Isolated from Soil.	Seo YL, Jung J, Khan SA, Kim KH, Jeon CO	Curr Microbiol	10.1007/s00284-020-02103-2	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68307

Ye Lin Seo, Jaejoon Jung, Shehzad Abid Khan, Kyung Hyun Kim & Che Ok Jeon: Flavihumibacter soli sp. nov., Isolated from Soil. Curr Microbiol 77: 3179 - 3184 2020 ( DOI 10.1007/s00284-020-02103-2 )

* These data were automatically processed and therefore are not curated

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