Flavihumibacter soli (KACC 21229, JCM 33473, R14)

Name: Flavihumibacter soli (KACC 21229, JCM 33473, R14)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164573

Type strain

Strain Designation R14

Culture col. no. KACC 21229 JCM 33473 R14

NCBI tax ID(s) 2705549

Special Collections JCM Literature strains

Links

Flavihumibacter soli R14 is an obligate aerobe, mesophilic, Gram-positive prokaryote that forms circular colonies and was isolated from Soil in Seoul.

Gram-positive rod-shaped colony-forming obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 133503

JCM 33473

@ref 20215

Last LPSN update 2025-12-16 10:09:29

Domain Pseudomonadati

Phylum Bacteroidota

Class Chitinophagia

Order Chitinophagales

Family Chitinophagaceae

Genus Flavihumibacter

Species Flavihumibacter soli

Full scientific name Flavihumibacter soli Seo et al. 2021

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Confidence
68307	positive	1.8-2.3 µm	0.4-0.5 µm	rod-shaped
125439	negative					99.5

Colony morphology

@ref	Colony color	Colony shape	Medium used
68307	yellow	circular	Reasoner's 2A agar (R2A)

Pigmentation

@ref	Production	Name
68307		Flexirubin type pigments

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic
68307	positive	growth	25-37	mesophilic
68307	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH
68307	positive	optimum	6.5
68307	positive	growth	5-8

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
68307	obligate aerobe
125439	obligate aerobe	93.4

Spore formation

@ref	Spore formation	Confidence
125439		97.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
68307	NaCl	positive	growth	0-0.5 %(w/v)
68307	NaCl	positive	optimum	0 %(w/v)

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68307		casein	-	hydrolysis
68307	17634 ChEBI	D-glucose	+	assimilation
68307	4853 ChEBI	esculin	-	hydrolysis
68307	5291 ChEBI	gelatin	-	hydrolysis
68307	17632 ChEBI	nitrate	-	reduction
68307	28017 ChEBI	starch	+	hydrolysis
68307	53424 ChEBI	tween 20	-	hydrolysis
68307	53426 ChEBI	tween 80	+	hydrolysis
68307	18186 ChEBI	tyrosine	-	hydrolysis
68307	16199 ChEBI	urea	+	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68307	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68307	acid phosphatase	+	3.1.3.2
68307	alkaline phosphatase	+	3.1.3.1
68307	alpha-fucosidase	+	3.2.1.51
68307	alpha-galactosidase	+	3.2.1.22
68307	alpha-glucosidase	+	3.2.1.20
68307	beta-glucuronidase	+	3.2.1.31
68307	catalase	+	1.11.1.6
68307	cystine arylamidase	+	3.4.11.3
68307	cytochrome oxidase	-	1.9.3.1
68307	esterase (C 4)	+
68307	esterase Lipase (C 8)	+
68307	leucine arylamidase	+	3.4.11.1
68307	lipase (C 14)	+
68307	N-acetyl-beta-glucosaminidase	+	3.2.1.52
68307	naphthol-AS-BI-phosphohydrolase	+
68307	urease	+	3.5.1.5
68307	valine arylamidase	+

Fatty acid profile

Metadata FA analysis

@ref

68307

Fatty acid	Percentage
C15:0 iso	39.5
C17:0 iso 3OH	16.9
C16:0	8
C15:1 w6c	7.3
C15:0 iso G	6.9
C16:1 w5c	4.4
C15:0 anteiso	4.1
C17:0 iso	2.9
C15:0 iso 3OH	2.6
C18:0	2.3
C16:0 3OH	1.9
C16:1 w7c/C16:1 w6c	1.7
C12:0	1.6

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature
67770	Soil in Seoul		Republic of Korea	KOR	Asia
68307	soil	Seoul	Republic of Korea	KOR	Asia	37.5054	126.957 37.5054/126.957	R2A agar	3 days	30

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1069272v1 assembly for Flavihumibacter soli R14	contig	GCA_010692725	2705549.3	2890264764	2705549	32.39

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Flavihumibacter soli strain R14 16S ribosomal RNA gene, partial sequence	MN086351	1460		2705549

GC content

@ref	GC-content (mol%)	Method
68307	44.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Flavihumibacter soli R14
NCBI: GCA_010692725

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.40	no
125439	motility	BacteriaNetⓘ	no	68.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavihumibacter soli sp. nov., Isolated from Soil.	Seo YL, Jung J, Khan SA, Kim KH, Jeon CO	Curr Microbiol	10.1007/s00284-020-02103-2	2020

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68307	Ye Lin Seo, Jaejoon Jung, Shehzad Abid Khan, Kyung Hyun Kim & Che Ok Jeon: Flavihumibacter soli sp. nov., Isolated from Soil. Curr Microbiol 77: 3179 - 3184 2020 ( DOI 10.1007/s00284-020-02103-2 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Flavihumibacter soli (KACC 21229, JCM 33473, R14)

Name and taxonomic classification