Name: Mucilaginibacter agri JCM 33472
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164572

Type strain:

Species: Mucilaginibacter agri

Culture col. no.: JCM 33472, KACC 21228

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; R11.

NCBI tax ID(s): 2695265 (species)

Section

Mucilaginibacter agri JCM 33472 is a mesophilic bacterium that was isolated from Soil in the Republic of Korea.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Sphingobacteriia*
	Order	*Sphingobacteriales*
	Family	*Sphingobacteriaceae*
	Genus	*Mucilaginibacter*
	Species	**Mucilaginibacter agri**
	Full Scientific Name (LPSN)	Mucilaginibacter agri Seo et al. 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil in the Republic of Korea
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mucilaginibacter sp. strain R11 16S ribosomal RNA gene, partial sequence	MN080907	1444	ENA	1882438 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Mucilaginibacter agri R11	GCA_009928685	contig	GenBank	2695265 tax ID

[Ref.: #67770]

GC-content

42.7 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mucilaginibacter agri R11 NCBI: GCA_009928685.1
[Ref.: #69480]	motile	no	90.129	no
[Ref.: #69480]	flagellated	no	97.873	no
[Ref.: #69480]	gram-positive	no	96.906	no
[Ref.: #69480]	anaerobic	no	99.34	no
[Ref.: #69480]	aerobic	yes	86.622	no
[Ref.: #69480]	halophile	no	96.2	no
[Ref.: #69480]	spore-forming	no	92.883	no
[Ref.: #69480]	glucose-util	yes	89.242	no
[Ref.: #69480]	thermophile	no	98.952	yes
[Ref.: #69480]	glucose-ferment	no	91.029	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33472, KACC 21228

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mucilaginibacter agri sp. nov. and Mucilaginibacter humi sp. nov., isolated from soil.	Seo YL, Khan SA, Kim HM, Chun BH, Han DM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijsem.0.004321	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Mucilaginibacter agri R11

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