Name: Actinomadura litoris JCM 33456
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164564

Type strain:

Species: Actinomadura litoris

Culture col. no.: JCM 33456, CCTCC AA 2019043

Strain history: J. Zhao; Northeast Agric. Univ., China; NEAU-AAG5.

NCBI tax ID(s): 2678616 (species)

Special Collections

Section

Actinomadura litoris JCM 33456 is a spore-forming bacterium that was isolated from Sandy soil from Niuwang island in Sanya.

spore-forming
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinomadura*
	Species	**Actinomadura litoris**
	Full Scientific Name (LPSN)	Actinomadura litoris Cao et al. 2021

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(H₄), MK-9(H₆), MK-9(H₈)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sandy soil from Niuwang island in Sanya
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hainan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinomadura litoris strain NEAU-AAG5 16S ribosomal RNA gene, partial sequence	MN700217	1508	GenBank ENA	2678616 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinomadura litoris NEAU-AAG5	GCA_009733595	scaffold	GenBank ENA	2678616 tax ID

[Ref.: #67770]

GC-content

72.8 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinomadura litoris NEAU-AAG5 NCBI: GCA_009733595.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Actinomadura litoris NEAU-AAG5 NCBI: GCA_009733595.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.74	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	95.376	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.921	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	86.08	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	93.774	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33456, CCTCC AA 2019043

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura litoris sp. nov., an actinobacterium isolated from sandy soil in Sanya.	Cao P, Xu X, Li C, Han L, Mu W, Xiang W, Zhao J, Wang X	Int J Syst Evol Microbiol	10.1099/ijsem.0.004708	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Actinomadura litoris in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Actinomadura litoris NEAU-AAG5

Actinomadura litoris NEAU-AAG5

Change proposal

Change proposal