Name: Actinomadura physcomitrii LD22
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 164563

Type strain:

Species: Actinomadura physcomitrii

Strain Designation: LD22

Culture col. no.: JCM 33455, CCTCC AA 2018050

Strain history: J. Zhao; Sch. of Life Sci., Northeast Agric. Univ., China; LD22.

NCBI tax ID(s): 2650748 (species)

Special Collections

Section

Actinomadura physcomitrii LD22 is an aerobe, spore-forming, Gram-positive bacterium that has a pale yellow pigmentation and was isolated from Moss [Physcomitrium sphaericum Fuernr] from Yunnan Province.

Gram-positive
pigmented
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Streptosporangiales*
	Family	*Thermomonosporaceae*
	Genus	*Actinomadura*
	Species	**Actinomadura physcomitrii**
	Full Scientific Name (LPSN)	Actinomadura physcomitrii Zhuang et al. 2020

Information on morphological and physiological properties Morphology

[Ref.: #68095]	Gram stain	positive

[Ref.: #68095]	Pigment production	yes
[Ref.: #68095]	Pigmentation color	pale yellow
[Ref.: #68095]	Pigment name	diffusible pigment

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	28 °C
[Ref.: #68095]	growth	20-45 °C
[Ref.: #68095]	optimum	28 °C

	pH	Kind of pH		pH
[Ref.: #68095]			optimum	7
[Ref.: #68095]			growth	4.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68095]

Oxygen tolerance

aerobe

[Ref.: #68095]	Spore description	oval, warty and non-motile 0.7-0.9 9 1.0-1.2 um
[Ref.: #68095]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68095]		NaCl		growth	0.0-2.0	%(w/v)

[Ref.: #67770]	Observation	quinones: MK-9(H₄), MK-9(H₈), MK-9(H₆), MK-9(H₂)
[Ref.: #68095]	Observation	The diagnostic cell wall diamino acid is meso-diaminopimelic acid
[Ref.: #68095]	Observation	Contains diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol and phosphatidylinositol mannoside as polar lipids
[Ref.: #68095]	Observation	The menaquinones are MK-9(H4), MK-9(H8), MK-9(H6) and MK-9(H2)
[Ref.: #68095]	Observation	Forms welldeveloped and extensively branched substrate mycelia
[Ref.: #68095]	Observation	Aerial mycelia form flexuous spore chains
[Ref.: #68095]	Observation	Aerial mass colour is white
[Ref.: #68095]	Observation	substrate mycelium varied from pale yellow to brilliant greenish yellow

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68095]	cellulose ChEBI	-	hydrolysis
[Ref.: #68095]	creatine ChEBI	-	nitrogen source
[Ref.: #68095]	D-fructose ChEBI	+	assimilation
[Ref.: #68095]	D-galactose ChEBI	-	assimilation
[Ref.: #68095]	D-glucose ChEBI	+	assimilation
[Ref.: #68095]	D-mannose ChEBI	-	assimilation
[Ref.: #68095]	D-xylose ChEBI	-	assimilation
[Ref.: #68095]	esculin ChEBI	-	hydrolysis
[Ref.: #68095]	gelatin ChEBI	-	degradation
[Ref.: #68095]	glycine ChEBI	-	nitrogen source
[Ref.: #68095]	L-alanine ChEBI	+	nitrogen source
[Ref.: #68095]	L-arabinose ChEBI	-	assimilation
[Ref.: #68095]	L-arginine ChEBI	+	nitrogen source
[Ref.: #68095]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #68095]	L-glutamate ChEBI	-	nitrogen source
[Ref.: #68095]	L-glutamine ChEBI	-	nitrogen source
[Ref.: #68095]	L-proline ChEBI	+	nitrogen source
[Ref.: #68095]	L-rhamnose ChEBI	+	assimilation
[Ref.: #68095]	L-serine ChEBI	+	nitrogen source
[Ref.: #68095]	L-threonine ChEBI	+	nitrogen source
[Ref.: #68095]	L-tyrosine ChEBI	+	nitrogen source
[Ref.: #68095]	lactose ChEBI	+	assimilation
[Ref.: #68095]	maltose ChEBI	+	assimilation
[Ref.: #68095]	milk	-	assimilation
[Ref.: #68095]	myo-inositol ChEBI	-	assimilation
[Ref.: #68095]	nitrate ChEBI	-	reduction
[Ref.: #68095]	raffinose ChEBI	+	assimilation
[Ref.: #68095]	sucrose ChEBI	+	assimilation
[Ref.: #68095]	tween 20 ChEBI	-	degradation
[Ref.: #68095]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68095]		hydrogen sulfide ChEBI	no

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Moss [Physcomitrium sphaericum (Ludw) Fuernr] from Yunnan Province
[Ref.: #67770]	Host species	Physcomitrium sphaericum
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #68095]	Sample type/isolated from	moss [Physcomitrium sphaericum (Ludw) Fuernr]
[Ref.: #68095]	Geographic location (country and/or sea, region)	Kunming, Yunnan Province
[Ref.: #68095]	Country	China
[Ref.: #68095]	Country ISO 3 Code	CHN
[Ref.: #68095]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinomadura physcomitrii strain LD22 16S ribosomal RNA gene, partial sequence	MH715905	1509	GenBank ENA	2650748 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Actinomadura physcomitrii LD22	GCA_008923205	scaffold	GenBank ENA	2650748 tax ID
[Ref.: #66792]	Actinomadura physcomitrii LD22	2898562265	draft	JGI IMG/M	2650748 tax ID	*

[Ref.: #67770]

GC-content

72.5 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Actinomadura physcomitrii LD22 NCBI: GCA_008923205.2
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33455, CCTCC AA 2018050

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actinomadura violacea sp. nov., a madurastatin A1-producing strain isolated from lichen in Thailand.	Kanchanasin P, Phongsopitanun W, Yuki M, Kudo T, Ohkuma M, Nakashima T, Tanasupawat S	Int J Syst Evol Microbiol	10.1099/ijsem.0.005126	2021	*
Phylogeny	Actinomadura physcomitrii sp. nov., a novel actinomycete isolated from moss [Physcomitrium sphaericum (Ludw) Fuernr].	Zhuang X, Peng C, Wang Z, Zhao J, Shen Y, Liu C, Xiang W	Antonie Van Leeuwenhoek	10.1007/s10482-019-01380-7	2020	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68095

Xiaoxin Zhuang, Chenghui Peng, Zhiyan Wang, Junwei Zhao, Yue Shen, Chongxi Liu & Wensheng Xiang: Actinomadura physcomitrii sp. nov., a novel actinomycete isolated from moss [Physcomitrium sphaericum (Ludw) Fuernr]. Antonie Van Leeuwenhoek 113: 677 - 685 2020 ( DOI 10.1007/s10482-019-01380-7 )

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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