Strain identifier
BacDive ID: 164564
Type strain: 
Species: Actinomadura litoris
Strain history: J. Zhao; Northeast Agric. Univ., China; NEAU-AAG5.
NCBI tax ID(s): 2678616 (species)
version 9.3 (current version)
General
@ref: 67770
BacDive-ID: 164564
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic
description: Actinomadura litoris JCM 33456 is a spore-forming, mesophilic bacterium that was isolated from Sandy soil from Niuwang island in Sanya.
NCBI tax id
- NCBI tax id: 2678616
- Matching level: species
strain history
- @ref: 67770
- history: J. Zhao; Northeast Agric. Univ., China; NEAU-AAG5.
doi: 10.13145/bacdive164564.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Thermomonosporaceae
- genus: Actinomadura
- species: Actinomadura litoris
- full scientific name: Actinomadura litoris Cao et al. 2021
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Streptosporangiales
family: Thermomonosporaceae
genus: Actinomadura
species: Actinomadura litoris
full scientific name: Actinomadura litoris Cao et al. 2021
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | positive | 99.6 | |
| 125439 | 91.7 | no |
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: aerobe
- confidence: 96.6
spore formation
- @ref: 125439
- spore formation: yes
- confidence: 95.8
observation
- @ref: 67770
- observation: quinones: MK-9(H4), MK-9(H6), MK-9(H8)
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Sandy soil from Niuwang island in Sanya
- geographic location: Hainan Province
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Actinomadura litoris strain NEAU-AAG5 16S ribosomal RNA gene, partial sequence
- accession: MN700217
- length: 1508
- database: nuccore
- NCBI tax ID: 2678616
Genome sequences
- @ref: 67770
- description: Actinomadura litoris NEAU-AAG5
- accession: GCA_009733595
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 2678616
GC content
- @ref: 67770
- GC-content: 72.8
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 88.74 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 95.376 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 87.921 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 86.08 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 93.774 | yes |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 89 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 95.8 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 91.7 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | positive | 99.6 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | aerobe | 96.6 |
External links
@ref: 67770
culture collection no.: JCM 33456, CCTCC AA 2019043
literature
- topic: Phylogeny
- Pubmed-ID: 33616515
- title: Actinomadura litoris sp. nov., an actinobacterium isolated from sandy soil in Sanya.
- authors: Cao P, Xu X, Li C, Han L, Mu W, Xiang W, Zhao J, Wang X
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.004708
- year: 2021
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |