Name: Labedella phragmitis JCM 33144
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 164464

Type strain:

Species: Labedella phragmitis

Culture col. no.: JCM 33144, CGMCC 1.16700

Strain history: C.-H. Sun; Inst. of Med. Biotechmol., Chin. Acad. of Med. Sci., China; 11W25H-1.

NCBI tax ID(s): 2498849 (species)

Section

Labedella phragmitis JCM 33144 is a mesophilic bacterium that was isolated from Surface-sterilized plant tissues from the Taklamakan Desert in the Xinjiang Uygur Autonomous Region.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micrococcales*
	Family	*Microbacteriaceae*
	Genus	*Labedella*
	Species	**Labedella phragmitis**
	Full Scientific Name (LPSN)	Labedella phragmitis Li et al. 2020

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-12, MK-11

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Surface-sterilized plant tissues from the Taklamakan Desert in the Xinjiang Uygur Autonomous Region
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Labedella sp. strain 11W25H-1 16S ribosomal RNA gene, partial sequence	MK333282	1482	ENA	1925027 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Labedella phragmitis 11W25H-1	GCA_004078635	contig	GenBank	2498849 tax ID

[Ref.: #67770]

GC-content

69.1 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Labedella phragmitis 11W25H-1 NCBI: GCA_004078635.1
[Ref.: #69480]	flagellated	no	97.523	no
[Ref.: #69480]	gram-positive	yes	91.743	no
[Ref.: #69480]	anaerobic	no	99.057	no
[Ref.: #69480]	aerobic	yes	90.559	no
[Ref.: #69480]	halophile	no	89.653	no
[Ref.: #69480]	spore-forming	no	93.777	no
[Ref.: #69480]	thermophile	no	99.356	yes
[Ref.: #69480]	glucose-util	yes	89.416	no
[Ref.: #69480]	motile	no	86.474	no
[Ref.: #69480]	glucose-ferment	no	88.245	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 33144, CGMCC 1.16700

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Labedella phragmitis sp. nov. and Labedella populi sp. nov., two endophytic actinobacteria isolated from plants in the Taklamakan Desert and emended description of the genus Labedella.	Li FN, Lu Q, Liao SL, Jin T, Li W, Sun CH	Syst Appl Microbiol	10.1016/j.syapm.2019.126004	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Labedella phragmitis 11W25H-1

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