Strain identifier

BacDive ID: 164464

Type strain: Yes

Species: Labedella phragmitis

Strain history: C.-H. Sun; Inst. of Med. Biotechmol., Chin. Acad. of Med. Sci., China; 11W25H-1.

NCBI tax ID(s): 2498849 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 67770

BacDive-ID: 164464

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Labedella phragmitis JCM 33144 is a mesophilic bacterium that was isolated from Surface-sterilized plant tissues from the Taklamakan Desert in the Xinjiang Uygur Autonomous Region.

NCBI tax id

  • NCBI tax id: 2498849
  • Matching level: species

strain history

  • @ref: 67770
  • history: C.-H. Sun; Inst. of Med. Biotechmol., Chin. Acad. of Med. Sci., China; 11W25H-1.

doi: 10.13145/bacdive164464.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Microbacteriaceae
  • genus: Labedella
  • species: Labedella phragmitis
  • full scientific name: Labedella phragmitis Li et al. 2020

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Microbacteriaceae

genus: Labedella

species: Labedella phragmitis

full scientific name: Labedella phragmitis Li et al. 2020

type strain: yes

Culture and growth conditions

culture temp

  • @ref: 67770
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-12, MK-11

Isolation, sampling and environmental information

isolation

  • @ref: 67770
  • sample type: Surface-sterilized plant tissues from the Taklamakan Desert in the Xinjiang Uygur Autonomous Region
  • country: China
  • origin.country: CHN
  • continent: Asia

Sequence information

16S sequences

  • @ref: 67770
  • description: Labedella sp. strain 11W25H-1 16S ribosomal RNA gene, partial sequence
  • accession: MK333282
  • length: 1482
  • database: ena
  • NCBI tax ID: 1925027

Genome sequences

  • @ref: 67770
  • description: Labedella phragmitis 11W25H-1
  • accession: GCA_004078635
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 2498849

GC content

  • @ref: 67770
  • GC-content: 69.1
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.523no
gram-positiveyes91.743no
anaerobicno99.057no
aerobicyes90.559no
halophileno89.653no
spore-formingno93.777no
thermophileno99.356yes
glucose-utilyes89.416no
motileno86.474no
glucose-fermentno88.245no

External links

@ref: 67770

culture collection no.: JCM 33144, CGMCC 1.16700

literature

  • topic: Phylogeny
  • Pubmed-ID: 31402073
  • title: Labedella phragmitis sp. nov. and Labedella populi sp. nov., two endophytic actinobacteria isolated from plants in the Taklamakan Desert and emended description of the genus Labedella.
  • authors: Li FN, Lu Q, Liao SL, Jin T, Li W, Sun CH
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2019.126004
  • year: 2019
  • mesh: Actinobacteria/chemistry/*classification/genetics, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial/genetics, Genome, Bacterial/genetics, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plants/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Vitamin K 2/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/url
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/