Strain identifier
BacDive ID: 164464
Type strain:
Species: Labedella phragmitis
Strain history: C.-H. Sun; Inst. of Med. Biotechmol., Chin. Acad. of Med. Sci., China; 11W25H-1.
NCBI tax ID(s): 2498849 (species)
General
@ref: 67770
BacDive-ID: 164464
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Labedella phragmitis JCM 33144 is a mesophilic bacterium that was isolated from Surface-sterilized plant tissues from the Taklamakan Desert in the Xinjiang Uygur Autonomous Region.
NCBI tax id
- NCBI tax id: 2498849
- Matching level: species
strain history
- @ref: 67770
- history: C.-H. Sun; Inst. of Med. Biotechmol., Chin. Acad. of Med. Sci., China; 11W25H-1.
doi: 10.13145/bacdive164464.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Labedella
- species: Labedella phragmitis
- full scientific name: Labedella phragmitis Li et al. 2020
@ref: 67770
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Micrococcales
family: Microbacteriaceae
genus: Labedella
species: Labedella phragmitis
full scientific name: Labedella phragmitis Li et al. 2020
type strain: yes
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-12, MK-11
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Surface-sterilized plant tissues from the Taklamakan Desert in the Xinjiang Uygur Autonomous Region
- country: China
- origin.country: CHN
- continent: Asia
Sequence information
16S sequences
- @ref: 67770
- description: Labedella sp. strain 11W25H-1 16S ribosomal RNA gene, partial sequence
- accession: MK333282
- length: 1482
- database: ena
- NCBI tax ID: 1925027
Genome sequences
- @ref: 67770
- description: Labedella phragmitis 11W25H-1
- accession: GCA_004078635
- assembly level: contig
- database: ncbi
- NCBI tax ID: 2498849
GC content
- @ref: 67770
- GC-content: 69.1
- method: genome sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
flagellated | no | 97.523 | no |
gram-positive | yes | 91.743 | no |
anaerobic | no | 99.057 | no |
aerobic | yes | 90.559 | no |
halophile | no | 89.653 | no |
spore-forming | no | 93.777 | no |
thermophile | no | 99.356 | yes |
glucose-util | yes | 89.416 | no |
motile | no | 86.474 | no |
glucose-ferment | no | 88.245 | no |
External links
@ref: 67770
culture collection no.: JCM 33144, CGMCC 1.16700
literature
- topic: Phylogeny
- Pubmed-ID: 31402073
- title: Labedella phragmitis sp. nov. and Labedella populi sp. nov., two endophytic actinobacteria isolated from plants in the Taklamakan Desert and emended description of the genus Labedella.
- authors: Li FN, Lu Q, Liao SL, Jin T, Li W, Sun CH
- journal: Syst Appl Microbiol
- DOI: 10.1016/j.syapm.2019.126004
- year: 2019
- mesh: Actinobacteria/chemistry/*classification/genetics, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Genes, Bacterial/genetics, Genome, Bacterial/genetics, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, Plants/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Vitamin K 2/chemistry
- topic2: Genetics
Reference
@id | authors | title | doi/url |
---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |