Cite this strain

Staphylococcus sp. (JCM 31421)

Name: Staphylococcus sp. (JCM 31421)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 164057

Type strain

Culture col. no. JCM 31421

NCBI tax ID(s) 29387

Special Collections JCM

History JCM <-- J. Chen; Zhejiang Wanli Univ., China; AntiMn-1.

Links

JCM 31421 is a bacterium that was isolated from Deep-sea sediment.

genome sequence Bacteria

Name and taxonomic classification

SI-ID 131794

JCM 31421

@ref 20215

Last LPSN update 2026-05-29 08:45:19

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Full scientific name Staphylococcus Rosenbach 1884 (Approved Lists 1980)

Synonyms (1)

Mammaliicoccus

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	25

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	facultative anaerobe	91.746

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country
67770	Deep-sea sediment	eastern Pacific Ocean (the Clarion-Clipperton Zone)	Pacific Ocean

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
67770	ASM166339v1 assembly for Staphylococcus sp. AntiMn-1	complete	GCA_001663395	2718218446	1715860	96.98

GC content

@ref	GC-content (mol%)	Method
67770	33	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM166339v1 assembly for Staphylococcus sp. AntiMn-1
NCBI: GCA_001663395

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.75	no
125439	gram_stain	BacteriaNetⓘ	positive	54.57	no
125439	motility	BacteriaNetⓘ	yes	56.89	no
125439	spore_formation	BacteriaNetⓘ	yes	60.18	no

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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