Name: Streptomyces sodiiphilus DSM 41839
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 16395

Type strain:

Species: Streptomyces sodiiphilus

Culture col. no.: DSM 41839, CCTCC AA 203015, CIP 107975, YIM 80305, JCM 13581

Strain history: CIP <- 2003, W.J. Li, Yunnan Univ., Kunming, China: strain YIM 80305

NCBI tax ID(s): 226217 (species)

SI-ID 134257

CIP 107975, DSM 41839, JCM 13581

Special Collections

Section

Streptomyces sodiiphilus DSM 41839 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

Gram-positive
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces sodiiphilus**
	Full Scientific Name (LPSN)	Streptomyces sodiiphilus Li et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31389]	Gram stain	positive
[Ref.: #122648]	Gram stain	positive

[Ref.: #31389]	Motility	no
[Ref.: #122648]	Motility	no

[Ref.: #122648]	Cell shape	rod-shaped

[Ref.: #31389]

Pigment production

yes

Multimedia content

[Ref.: #10622]

Caption:

Medium 535 28°C

[Ref.: #10622]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #10622]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #10622]

Culture medium growth

[Ref.: #10622]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10622]

Culture medium composition

expand / minimize

[Ref.: #33185]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33185]

Culture medium growth

[Ref.: #33185]

Culture medium composition

expand / minimize

[Ref.: #10622]

Culture medium

STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)

[Ref.: #10622]

Culture medium growth

[Ref.: #10622]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10622]

Culture medium composition

expand / minimize

[Ref.: #10622]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #10622]

Culture medium growth

[Ref.: #10622]

Culture medium link

Medium recipe at MediaDive

[Ref.: #10622]

Culture medium composition

expand / minimize

[Ref.: #122648]

Culture medium

CIP Medium 72

[Ref.: #122648]

Culture medium growth

[Ref.: #122648]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #10622]		growth	28 °C
[Ref.: #31389]		optimum	28 °C
[Ref.: #33185]		growth	30 °C
[Ref.: #67770]		growth	28 °C
[Ref.: #122648]		growth	25-37 °C
[Ref.: #122648]	no	growth	10 °C
[Ref.: #122648]	no	growth	41 °C
[Ref.: #122648]	no	growth	45 °C

	pH	Kind of pH		pH
[Ref.: #31389]			optimum	8
[Ref.: #31389]			growth	7.0-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31389]	Oxygen tolerance	aerobe
[Ref.: #122648]	Oxygen tolerance	obligate aerobe

[Ref.: #31389]

Ability of spore formation

yes

	Salt	Tested relation		Salt conc.
[Ref.: #31389]	NaCl		optimum	3	%
[Ref.: #122648]	NaCl		growth	0	%
[Ref.: #122648]	NaCl	no	growth	2	%
[Ref.: #122648]	NaCl	no	growth	4	%
[Ref.: #122648]	NaCl	no	growth	6	%
[Ref.: #122648]	NaCl	no	growth	8	%
[Ref.: #122648]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-9(H₆), MK-9(H₄), MK-9(H₈)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31389]	acetate ChEBI	+	carbon source
[Ref.: #122648]	citrate ChEBI	-	carbon source
[Ref.: #122648]	esculin ChEBI	+	hydrolysis
[Ref.: #122648]	hippurate ChEBI	+	hydrolysis
[Ref.: #31389]	nitrate ChEBI	+	reduction
[Ref.: #122648]	nitrate ChEBI	+	reduction
[Ref.: #122648]	nitrite ChEBI	-	reduction
[Ref.: #31389]	rhamnose ChEBI	+	carbon source

	Metabolite production	Metabolite	Production
[Ref.: #122648]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #122648]		acetoin ChEBI	-
[Ref.: #122648]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #122648]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122648]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122648]	gamma-glutamyltransferase	-	2.3.2.2
[Ref.: #31389]	gelatinase	+
[Ref.: #122648]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #122648]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122648]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122648]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122648]	tryptophan deaminase	-
[Ref.: #122648]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122648]	10787	-	+	+	+	+	+	-	-	-	-	-	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #10622]	Sample type/isolated from	soil
[Ref.: #10622]	Geographic location (country and/or sea, region)	Qinghaj Province
[Ref.: #10622]	Country	China
[Ref.: #10622]	Country ISO 3 Code	CHN
[Ref.: #10622]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Muddy saline-alkaline soil near Chaka salt lake
[Ref.: #67770]	Geographic location (country and/or sea, region)	Qinghai Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #122648]	Sample type/isolated from	Environment, Soil
[Ref.: #122648]	Geographic location (country and/or sea, region)	Qinghai
[Ref.: #122648]	Country	China
[Ref.: #122648]	Country ISO 3 Code	CHN
[Ref.: #122648]	Continent	Asia
[Ref.: #122648]	Isolation date	2002
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #10622]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122648]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #31389]	Streptomyces sodiiphilus strain YIM 80305 16S ribosomal RNA gene, partial sequence	AY236339	1489	GenBank ENA	226217 tax ID

[Ref.: #10622]	GC-content	70.5 mol%
[Ref.: #67770]	GC-content	70.5 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #10622]

Culture collection no.

DSM 41839, CCTCC AA 203015, CIP 107975, YIM 80305, JCM 13581

[Ref.: #85445]

SI-ID 134257

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces alkalithermotolerans sp. nov., a novel alkaliphilic and thermotolerant actinomycete isolated from a soda lake.	Sultanpuram VR, Mothe T, Mohammed F	Antonie Van Leeuwenhoek	10.1007/s10482-014-0332-z	2014	*
Phylogeny	Streptomyces bohaiensis sp. nov., a novel actinomycete isolated from Scomberomorus niphonius in the Bohai Sea.	Pan HQ, Cheng J, Zhang DF, Yu SY, Khieu TN, Son CK, Jiang Z, Hu JC, Li WJ	J Antibiot (Tokyo)	10.1038/ja.2014.137	2014	*
Phylogeny	Streptomyces panacagri sp. nov., isolated from soil of a ginseng field.	Cui Y, Baek SH, Wang L, Lee HG, Cui C, Lee ST, Im WT	Int J Syst Evol Microbiol	10.1099/ijs.0.029942-0	2011	*
Phylogeny	Streptomyces nanshensis sp. nov., isolated from the Nansha Islands in the South China Sea.	Tian XP, Zhang YQ, Li QX, Zhi XY, Tang SK, Zhang S, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.003442-0	2009	*
Phylogeny	Streptomyces sodiiphilus sp. nov., a novel alkaliphilic actinomycete.	Li WJ, Zhang YG, Zhang YQ, Tang SK, Xu P, Xu LH, Jiang CL	Int J Syst Evol Microbiol	10.1099/ijs.0.63457-0	2005	*

References

#10622

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 41839

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31389

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27700 (see below)

#33185 ; Curators of the CIP;
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#85445

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID134257.1 )

#122648 Collection of Institut Pasteur ; Curators of the CIP; CIP 107975

#27700

IJSEM 1329 2005 ( DOI 10.1099/ijs.0.63457-0 , PubMed 15879277 )

* These data were automatically processed and therefore are not curated

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