Name: Streptomyces dangxiongensis Z022
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163941

Type strain:

Species: Streptomyces dangxiongensis

Strain Designation: Z022

Culture col. no.: JCM 31053, CGMCC 4.7273

Strain history: W. Zhang; Cold & Arid Reg. Environ. & Eng. Res. Inst., CAS, China; Z022.

NCBI tax ID(s): 1442032 (species)

Section

Streptomyces dangxiongensis Z022 is an aerobe, spore-forming, mesophilic bacterium that has a brown pigmentation and was isolated from Soil from Dangxiong.

Gram-positive
pigmented
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces dangxiongensis**
	Full Scientific Name (LPSN)	Streptomyces dangxiongensis Zhang et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #68168]	Gram stain	positive

[Ref.: #68168]	Motility	no

[Ref.: #68168]	Pigment production	yes
[Ref.: #68168]	Pigmentation color	brown

[Ref.: #68168]	Multicellular complex forming ability	yes
[Ref.: #68168]	Multicellular complex color	depending on medium: Aerial mycelia are whitish (ISP 2, ISP 4, ISP 5, ISP 7, Czapek's agar), grey (ISP 3) or light yellow (ISP 6, nutrient agar)
[Ref.: #68168]	Medium Name (multicellularity)	ISP2, ISP3, ISP4, ISP5, ISP6, ISP7,Czapek's agar, nutrient agar
[Ref.: #68168]	Multicellular complex further description	branch substrate hyphae and aerial mycelium mycelium that differentiates into straight chains with spiny and/or hairy spores

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	28 °C
[Ref.: #68168]	growth	20-40 °C
[Ref.: #68168]	optimum	30 °C

[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #68168]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #68168]			optimum	7-8
[Ref.: #68168]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68168]

Oxygen tolerance

aerobe

[Ref.: #68168]	Spore description	aerial mycelium differentiates into straight chains with spiny and/or hairy spores.
[Ref.: #68168]	Type of spore	spore
[Ref.: #68168]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68168]		NaCl		growth	0-7	%(w/v)
[Ref.: #68168]		NaCl		optimum	0-2	%(w/v)

[Ref.: #67770]	Observation	quinones: MK-9(H₈), MK-9(H₆)
[Ref.: #68168]	Observation	forms branch substrate hyphae and aerial mycelium that differentiates into straight chains with spiny and/or hairy spores

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68168]	cellulose ChEBI	+	degradation
[Ref.: #68168]	D-fructose ChEBI	+	carbon source
[Ref.: #68168]	D-galactose ChEBI	+	carbon source
[Ref.: #68168]	D-glucose ChEBI	+	carbon source
[Ref.: #68168]	D-mannitol ChEBI	+/-	carbon source
[Ref.: #68168]	D-xylose ChEBI	+/-	carbon source
[Ref.: #68168]	gelatin ChEBI	+	degradation
[Ref.: #68168]	L-alanine ChEBI	+	nitrogen source
[Ref.: #68168]	L-arabinose ChEBI	+	carbon source
[Ref.: #68168]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #68168]	L-cysteine ChEBI	+	nitrogen source
[Ref.: #68168]	L-histidine ChEBI	+	nitrogen source
[Ref.: #68168]	L-rhamnose ChEBI	-	carbon source
[Ref.: #68168]	lactose ChEBI	+/-	carbon source
[Ref.: #68168]	leucine ChEBI	-	nitrogen source
[Ref.: #68168]	myo-inositol ChEBI	-	carbon source
[Ref.: #68168]	raffinose ChEBI	-	carbon source
[Ref.: #68168]	starch ChEBI	+	degradation
[Ref.: #68168]	sucrose ChEBI	-	carbon source
[Ref.: #68168]	tween 20 ChEBI	+	degradation
[Ref.: #68168]	tween 80 ChEBI	+	degradation
[Ref.: #68168]	urea ChEBI	+	degradation
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Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68168]

Fatty acid	Percentage
C15:0 anteiso	25.7
C16:0 iso	14.3
C17:0 anteiso	11.9
C17:1 anteiso w9c	8.4
C15:0 iso	7.3
C16:1 iso H	6.5
C16:1 anteiso w9c	5
C16:0	4.7
C16:0 10-methyl/C17:1 iso w9c	4.2
C17:0 iso	2.7
C18:1 w7c/C18:1 w6c	2.5
C14:0 iso	2.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil from Dangxiong
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tibet
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #68168]	Sample type/isolated from	grass soil sample
[Ref.: #68168]	Sampling date	2014-03-01
[Ref.: #68168]	Geographic location (country and/or sea, region)	Dangxiong, Lhasa city, Tibet Autonomous Region
[Ref.: #68168]	Country	China
[Ref.: #68168]	Country ISO 3 Code	CHN
[Ref.: #68168]	Continent	Asia
[Ref.: #68168]	Geographic location	30.3300°/91.5200°
[Ref.: #68168]	Enrichment culture	Gause's synthetic agar
[Ref.: #68168]	Enrichment culture composition	supplemented with nalidixic acid (25 g/ml)
[Ref.: #68168]	Enrichment culture duration	7 days
[Ref.: #68168]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68168]	Streptomyces sp. Z022 16S ribosomal RNA gene, partial sequence	KF729589	1491	ENA	1442032 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces dangxiongensis Z022	GCA_003675325	complete	GenBank	1442032 tax ID

[Ref.: #67770]

GC-content

72.16 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces dangxiongensis Z022 NCBI: GCA_003675325.1
[Ref.: #69480]	motile	no	94.491	no
[Ref.: #69480]	flagellated	no	98.174	yes
[Ref.: #69480]	gram-positive	yes	90.293	yes
[Ref.: #69480]	anaerobic	no	99.229	yes
[Ref.: #69480]	aerobic	yes	93.062	yes
[Ref.: #69480]	halophile	no	95.403	no
[Ref.: #69480]	spore-forming	yes	96.268	yes
[Ref.: #69480]	glucose-util	yes	90.928	yes
[Ref.: #69480]	thermophile	no	97.642	yes
[Ref.: #69480]	glucose-ferment	no	89.086	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31053, CGMCC 4.7273

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces dangxiongensis sp. nov., isolated from soil of Qinghai-Tibet Plateau.	Zhang B, Tang S, Yang R, Chen X, Zhang D, Zhang W, Li S, Chen T, Liu G, Dyson P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003550	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68168

Binglin Zhang, Shukun Tang, Ruiqi Yang, Ximing Chen, Dongming Zhang, Wei Zhang, Shiweng Li, Tuo Chen, Guangxiu Liu and Paul Dyson: Streptomyces dangxiongensis sp. nov., isolated from soil of Qinghai-Tibet Plateau. IJSEM 69: 2729 - 2734 2019 ( DOI 10.1099/ijsem.0.003550 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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