Name: Streptomyces dangxiongensis Z022
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 163941

Type strain:

Species: Streptomyces dangxiongensis

Strain Designation: Z022

Culture col. no.: JCM 31053, CGMCC 4.7273

Strain history: W. Zhang; Cold & Arid Reg. Environ. & Eng. Res. Inst., CAS, China; Z022.

NCBI tax ID(s): 1442032 (species)

Special Collections

Section

Streptomyces dangxiongensis Z022 is an aerobe, spore-forming, mesophilic bacterium that has a brown pigmentation and was isolated from Soil from Dangxiong.

Gram-positive
pigmented
spore-forming
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces dangxiongensis**
	Full Scientific Name (LPSN)	Streptomyces dangxiongensis Zhang et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #68168]	Gram stain	positive

[Ref.: #68168]	Motility	no

[Ref.: #68168]	Pigment production	yes
[Ref.: #68168]	Pigmentation color	brown

[Ref.: #68168]	Multicellular complex forming ability	yes
[Ref.: #68168]	Multicellular complex color	depending on medium: Aerial mycelia are whitish (ISP 2, ISP 4, ISP 5, ISP 7, Czapek's agar), grey (ISP 3) or light yellow (ISP 6, nutrient agar)
[Ref.: #68168]	Medium Name (multicellularity)	ISP2, ISP3, ISP4, ISP5, ISP6, ISP7,Czapek's agar, nutrient agar
[Ref.: #68168]	Multicellular complex further description	branch substrate hyphae and aerial mycelium mycelium that differentiates into straight chains with spiny and/or hairy spores

Information on culture and growth conditions Culture and growth conditions

		Temperature
[Ref.: #67770]	growth	28 °C
[Ref.: #68168]	growth	20-40 °C
[Ref.: #68168]	optimum	30 °C

	pH	Kind of pH		pH
[Ref.: #68168]			optimum	7-8
[Ref.: #68168]			growth	5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #68168]

Oxygen tolerance

aerobe

[Ref.: #68168]	Spore description	aerial mycelium differentiates into straight chains with spiny and/or hairy spores.
[Ref.: #68168]	Type of spore	spore
[Ref.: #68168]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %93.128

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #68168]		NaCl		growth	0-7	%(w/v)
[Ref.: #68168]		NaCl		optimum	0-2	%(w/v)

[Ref.: #67770]	Observation	quinones: MK-9(H₈), MK-9(H₆)
[Ref.: #68168]	Observation	forms branch substrate hyphae and aerial mycelium that differentiates into straight chains with spiny and/or hairy spores

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68168]	cellulose ChEBI	+	degradation
[Ref.: #68168]	D-fructose ChEBI	+	carbon source
[Ref.: #68168]	D-galactose ChEBI	+	carbon source
[Ref.: #68168]	D-glucose ChEBI	+	carbon source
[Ref.: #68168]	D-mannitol ChEBI	+/-	carbon source
[Ref.: #68168]	D-xylose ChEBI	+/-	carbon source
[Ref.: #68168]	gelatin ChEBI	+	degradation
[Ref.: #68168]	L-alanine ChEBI	+	nitrogen source
[Ref.: #68168]	L-arabinose ChEBI	+	carbon source
[Ref.: #68168]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #68168]	L-cysteine ChEBI	+	nitrogen source
[Ref.: #68168]	L-histidine ChEBI	+	nitrogen source
[Ref.: #68168]	L-rhamnose ChEBI	-	carbon source
[Ref.: #68168]	lactose ChEBI	+/-	carbon source
[Ref.: #68168]	leucine ChEBI	-	nitrogen source
[Ref.: #68168]	myo-inositol ChEBI	-	carbon source
[Ref.: #68168]	raffinose ChEBI	-	carbon source
[Ref.: #68168]	starch ChEBI	+	degradation
[Ref.: #68168]	sucrose ChEBI	-	carbon source
[Ref.: #68168]	tween 20 ChEBI	+	degradation
[Ref.: #68168]	tween 80 ChEBI	+	degradation
[Ref.: #68168]	urea ChEBI	+	degradation
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #68168]

Fatty acid	Percentage
C15:0 anteiso	25.7
C16:0 iso	14.3
C17:0 anteiso	11.9
C17:1 anteiso w9c	8.4
C15:0 iso	7.3
C16:1 iso H	6.5
C16:1 anteiso w9c	5
C16:0	4.7
C16:0 10-methyl/C17:1 iso w9c	4.2
C17:0 iso	2.7
C18:1 w7c/C18:1 w6c	2.5
C14:0 iso	2.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil from Dangxiong
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tibet
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #68168]	Sample type/isolated from	grass soil sample
[Ref.: #68168]	Sampling date	2014-03-01
[Ref.: #68168]	Geographic location (country and/or sea, region)	Dangxiong, Lhasa city, Tibet Autonomous Region
[Ref.: #68168]	Country	China
[Ref.: #68168]	Country ISO 3 Code	CHN
[Ref.: #68168]	Continent	Asia
[Ref.: #68168]	Geographic location	30.3300°/91.5200°
[Ref.: #68168]	Enrichment culture	Gause's synthetic agar
[Ref.: #68168]	Enrichment culture composition	supplemented with nalidixic acid (25 g/ml)
[Ref.: #68168]	Enrichment culture duration	7 days
[Ref.: #68168]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #68168]	Streptomyces dangxiongensis 16S ribosomal RNA gene, partial sequence	KF729589	1491	GenBank ENA	1442032 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Streptomyces dangxiongensis Z022	GCA_003675325	complete	GenBank ENA	1442032 tax ID

[Ref.: #67770]

GC-content

72.16 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Streptomyces dangxiongensis Z022 NCBI: GCA_003675325.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	88.626	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.06	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.401	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	93.128	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88	yes

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 31053, CGMCC 4.7273

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces dangxiongensis sp. nov., isolated from soil of Qinghai-Tibet Plateau.	Zhang B, Tang S, Yang R, Chen X, Zhang D, Zhang W, Li S, Chen T, Liu G, Dyson P	Int J Syst Evol Microbiol	10.1099/ijsem.0.003550	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68168

Binglin Zhang, Shukun Tang, Ruiqi Yang, Ximing Chen, Dongming Zhang, Wei Zhang, Shiweng Li, Tuo Chen, Guangxiu Liu and Paul Dyson: Streptomyces dangxiongensis sp. nov., isolated from soil of Qinghai-Tibet Plateau. IJSEM 69: 2729 - 2734 2019 ( DOI 10.1099/ijsem.0.003550 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces dangxiongensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF