Strain identifier

BacDive ID: 163941

Type strain: Yes

Species: Streptomyces dangxiongensis

Strain Designation: Z022

Strain history: W. Zhang; Cold & Arid Reg. Environ. & Eng. Res. Inst., CAS, China; Z022.

NCBI tax ID(s): 1442032 (species)

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General

@ref: 67770

BacDive-ID: 163941

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, pigmented

description: Streptomyces dangxiongensis Z022 is an aerobe, spore-forming, mesophilic bacterium that has a brown pigmentation and was isolated from Soil from Dangxiong.

NCBI tax id

  • NCBI tax id: 1442032
  • Matching level: species

strain history

  • @ref: 67770
  • history: W. Zhang; Cold & Arid Reg. Environ. & Eng. Res. Inst., CAS, China; Z022.

doi: 10.13145/bacdive163941.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces dangxiongensis
  • full scientific name: Streptomyces dangxiongensis Zhang et al. 2019

@ref: 67770

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Streptomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces dangxiongensis

full scientific name: Streptomyces dangxiongensis Zhang et al. 2019

strain designation: Z022

type strain: yes

Morphology

cell morphology

@refgram stainmotilityconfidence
68168positiveno
125439positive99.6

multicellular morphology

  • @ref: 68168
  • forms multicellular complex: yes
  • complex color: depending on medium: Aerial mycelia are whitish (ISP 2, ISP 4, ISP 5, ISP 7, Czapek's agar), grey (ISP 3) or light yellow (ISP 6, nutrient agar)
  • medium name: ISP2, ISP3, ISP4, ISP5, ISP6, ISP7,Czapek's agar, nutrient agar
  • further description: branch substrate hyphae and aerial mycelium mycelium that differentiates into straight chains with spiny and/or hairy spores

pigmentation

  • @ref: 68168
  • production: yes
  • color: brown

Culture and growth conditions

culture temp

@refgrowthtypetemperature
67770positivegrowth28
68168positivegrowth20-40
68168positiveoptimum30

culture pH

@refabilitytypepHPH range
68168positivegrowth5-9alkaliphile
68168positiveoptimum7-8

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
68168aerobe
125439obligate aerobe97.2

spore formation

@refspore descriptiontype of sporespore formationconfidence
68168aerial mycelium differentiates into straight chains with spiny and/or hairy spores.sporeyes
125438yes93.128

halophily

@refsaltgrowthtested relationconcentration
68168NaClpositivegrowth0-7 %(w/v)
68168NaClpositiveoptimum0-2 %(w/v)

observation

@refobservation
67770quinones: MK-9(H8), MK-9(H6)
68168forms branch substrate hyphae and aerial mycelium that differentiates into straight chains with spiny and/or hairy spores

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6816830849L-arabinose+carbon source
6816815824D-fructose+carbon source
6816817634D-glucose+carbon source
6816812936D-galactose+carbon source
6816817716lactose+/-carbon source
6816816899D-mannitol+/-carbon source
6816865327D-xylose+/-carbon source
6816817268myo-inositol-carbon source
6816816634raffinose-carbon source
6816862345L-rhamnose-carbon source
6816817992sucrose-carbon source
6816816977L-alanine+nitrogen source
6816817196L-asparagine+nitrogen source
6816815971L-histidine+nitrogen source
6816817561L-cysteine+nitrogen source
6816825017leucine-nitrogen source
6816828017starch+degradation
6816862968cellulose+degradation
681685291gelatin+degradation
6816853424tween 20+degradation
6816853426tween 80+degradation
6816816199urea+degradation

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    68168C14:0 iso2.1
    68168C15:0 iso7.3
    68168C15:0 anteiso25.7
    68168C16:04.7
    68168C16:0 iso14.3
    68168C16:1 iso H6.5
    68168C16:1 anteiso w9c5
    68168C17:0 iso2.7
    68168C17:0 anteiso11.9
    68168C17:1 anteiso w9c8.4
    68168C18:1 w7c/C18:1 w6c2.5
    68168C16:0 10-methyl/C17:1 iso w9c4.2
  • type of FA analysis: whole cell analysis
  • incubation medium: TSB
  • incubation temperature: 30
  • incubation time: 10
  • library/peak naming table: TSBA 5.0
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling datelatitudelongitudeenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperature
67770Soil from DangxiongTibetChinaCHNAsia
68168grass soil sampleDangxiong, Lhasa city, Tibet Autonomous RegionChinaCHNAsia2014-03-0130.3391.52Gause's synthetic agarsupplemented with nalidixic acid (25 g/ml)7 days28

Sequence information

16S sequences

  • @ref: 68168
  • description: Streptomyces dangxiongensis 16S ribosomal RNA gene, partial sequence
  • accession: KF729589
  • length: 1491
  • database: nuccore
  • NCBI tax ID: 1442032

Genome sequences

  • @ref: 67770
  • description: Streptomyces dangxiongensis Z022
  • accession: GCA_003675325
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 1442032

GC content

  • @ref: 67770
  • GC-content: 72.16
  • method: genome sequence analysis

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes88.626yes
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no97.06yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes89.401yes
125438spore-formingspore-formingAbility to form endo- or exosporesyes93.128yes
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96.5yes
125438motile2+flagellatedAbility to perform flagellated movementno88yes
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes88.9
125439BacteriaNetmotilityAbility to perform movementno87.6
125439BacteriaNetgram_stainReaction to gram-stainingpositive99.6
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe97.2

External links

@ref: 67770

culture collection no.: JCM 31053, CGMCC 4.7273

literature

  • topic: Phylogeny
  • Pubmed-ID: 31232681
  • title: Streptomyces dangxiongensis sp. nov., isolated from soil of Qinghai-Tibet Plateau.
  • authors: Zhang B, Tang S, Yang R, Chen X, Zhang D, Zhang W, Li S, Chen T, Liu G, Dyson P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.003550
  • year: 2019
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Tibet, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68168Binglin Zhang, Shukun Tang, Ruiqi Yang, Ximing Chen, Dongming Zhang, Wei Zhang, Shiweng Li, Tuo Chen, Guangxiu Liu and Paul DysonStreptomyces dangxiongensis sp. nov., isolated from soil of Qinghai-Tibet Plateau10.1099/ijsem.0.003550IJSEM 69: 2729-2734 2019
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG