Name: Limoniibacter endophyticus JCM 30141
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 163718

Type strain:

Species: Limoniibacter endophyticus

Culture col. no.: JCM 30141, CCTCC AB 2014130, CGMCC 1.12906, KCTC 42097

Strain history: W.-J. Li YIM 690229.

NCBI tax ID(s): 1565040 (species)

Section

Limoniibacter endophyticus JCM 30141 is a mesophilic, Gram-negative bacterium that was isolated from Roots of Limonium otolepis collected from Fukang in Xinjiang Province.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Hyphomicrobiaceae*
	Genus	*Limoniibacter*
	Species	**Limoniibacter endophyticus**
	Full Scientific Name (LPSN)	Limoniibacter endophyticus Li et al. 2019

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.981

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.991
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Roots of Limonium otolepis collected from Fukang in Xinjiang Province
[Ref.: #67770]	Host species	Limonium otolepis
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KM243752 (>99% sequence identity) for Limoniibacter endophyticus subclade from Microbeatlas

Aquatic Samples	511
Soil Samples	986
Animal Samples	1276
Plant Samples	1496
Total Samples	4269

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Alpha proteobacterium YIM 690229 16S ribosomal RNA gene, partial sequence	KM243752	1453	ENA	1565040 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Limoniibacter endophyticus KCTC 42097	GCA_014652835	scaffold	GenBank	1565040 tax ID	*
[Ref.: #66792]	Limoniibacter endophyticus strain KCTC 42097	1565040.3	wgs	PATRIC	1565040 tax ID	*

[Ref.: #67770]

GC-content

57.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Limoniibacter endophyticus KCTC 42097 NCBI: GCA_014652835.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Limoniibacter endophyticus KCTC 42097 NCBI: GCA_014652835.1
[Ref.: #69480]	flagellated	no	84.473	no
[Ref.: #69480]	gram-positive	no	97.977	no
[Ref.: #69480]	anaerobic	no	95.492	no
[Ref.: #69480]	aerobic	yes	85.126	no
[Ref.: #69480]	halophile	no	86.636	no
[Ref.: #69480]	spore-forming	no	96.268	no
[Ref.: #69480]	glucose-util	yes	83.431	no
[Ref.: #69480]	thermophile	no	96.626	no
[Ref.: #69480]	motile	yes	82.856	no
[Ref.: #69480]	glucose-ferment	no	91.216	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30141, CCTCC AB 2014130, CGMCC 1.12906, KCTC 42097

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Limoniibacter endophyticus gen. nov., sp. nov., an alphaproteobacterium isolated from the roots of Limonium otolepis.	Li L, Osman G, Salam N, Mohamed OA, Jiao J, Ma J, Asem MD, Xiao M, Li WJ	Arch Microbiol	10.1007/s00203-017-1472-0	2018	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Limoniibacter endophyticus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Limoniibacter endophyticus KCTC 42097

Limoniibacter endophyticus KCTC 42097

Change proposal

Change proposal