Name: Aestuariicella hydrocarbonica JCM 30134
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 163717

Type strain:

Species: Aestuariicella hydrocarbonica

Culture col. no.: JCM 30134, KACC 18121

Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; SM-6.

NCBI tax ID(s): 1470433 (species)

Special Collections

Section

Aestuariicella hydrocarbonica JCM 30134 is a Gram-negative bacterium that was isolated from Sea tidal flat sediment of the Dangjin coastal area in South Korea.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	[Alteromonadales, not assigned to family]
	Genus	*Aestuariicella*
	Species	**Aestuariicella hydrocarbonica**
	Full Scientific Name (LPSN)	Aestuariicella hydrocarbonica Lo et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %97.5

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	25 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sea tidal flat sediment of the Dangjin coastal area in South Korea
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aestuariicella hydrocarbonica strain SM-6 16S ribosomal RNA gene, partial sequence	KF982858	1400	GenBank ENA	1470433 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Aestuariicella hydrocarbonica JCM 30134	GCA_011602365	contig	GenBank ENA	1470433 tax ID	*
[Ref.: #66792]	Aestuariicella hydrocarbonica strain JCM 30134	1470433.3	wgs	PATRIC	1470433 tax ID	*
[Ref.: #66792]	Aestuariicella hydrocarbonica JCM 30134	2886698166	draft	JGI IMG/M	1470433 tax ID	*

[Ref.: #67770]

GC-content

47.5 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aestuariicella hydrocarbonica strain JCM 30134 PATRIC: 1470433.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aestuariicella hydrocarbonica strain JCM 30134 PATRIC: 1470433.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	97.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.982	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.218	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	77.702	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.101	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	60.208	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 30134, KACC 18121

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aestuariicella hydrocarbonica gen. nov., sp. nov., an aliphatic hydrocarbon-degrading bacterium isolated from a sea tidal flat.	Lo N, Kim KH, Baek K, Jia B, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.000199	2015	*
Phylogeny	Aestuariicella albida sp. nov., isolated from surface water of the Yellow Sea, and proposal of the genus Aestuariicella as a member of the family Cellvibrionaceae.	Xue HP, Li JY, Zhang DF, Zhang AH, Huang JK, Liu C, Zhao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.005493	2022	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Aestuariicella hydrocarbonica strain JCM 30134

Aestuariicella hydrocarbonica strain JCM 30134

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