Strain identifier
BacDive ID: 163717
Type strain: 
Species: Aestuariicella hydrocarbonica
Strain history: C. O. Jeon; Chung-Ang Univ., South Korea; SM-6.
NCBI tax ID(s): 1470433 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 163717
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Aestuariicella hydrocarbonica JCM 30134 is a Gram-negative bacterium that was isolated from Sea tidal flat sediment of the Dangjin coastal area in South Korea.
NCBI tax id
- NCBI tax id: 1470433
- Matching level: species
strain history
- @ref: 67770
- history: C. O. Jeon; Chung-Ang Univ., South Korea; SM-6.
doi: 10.13145/bacdive163717.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadales, not assigned to family
- genus: Aestuariicella
- species: Aestuariicella hydrocarbonica
- full scientific name: Aestuariicella hydrocarbonica Lo et al. 2015
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadales, not assigned to family
genus: Aestuariicella
species: Aestuariicella hydrocarbonica
full scientific name: Aestuariicella hydrocarbonica Lo et al. 2015
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 97.5
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 25
Physiology and metabolism
spore formation
- @ref: 69481
- spore formation: no
- confidence: 100
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Sea tidal flat sediment of the Dangjin coastal area in South Korea
Sequence information
16S sequences
- @ref: 67770
- description: Aestuariicella hydrocarbonica strain SM-6 16S ribosomal RNA gene, partial sequence
- accession: KF982858
- length: 1400
- database: nuccore
- NCBI tax ID: 1470433
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Aestuariicella hydrocarbonica JCM 30134 | GCA_011602365 | contig | ncbi | 1470433 |
| 66792 | Aestuariicella hydrocarbonica strain JCM 30134 | 1470433.3 | wgs | patric | 1470433 |
| 66792 | Aestuariicella hydrocarbonica JCM 30134 | 2886698166 | draft | img | 1470433 |
GC content
- @ref: 67770
- GC-content: 47.5
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.5 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.982 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 89.218 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 77.702 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.101 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 60.208 | no |
External links
@ref: 67770
culture collection no.: JCM 30134, KACC 18121
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25795067 | Aestuariicella hydrocarbonica gen. nov., sp. nov., an aliphatic hydrocarbon-degrading bacterium isolated from a sea tidal flat. | Lo N, Kim KH, Baek K, Jia B, Jeon CO | Int J Syst Evol Microbiol | 10.1099/ijs.0.000199 | 2015 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Geologic Sediments/*microbiology, Hydrocarbons/metabolism, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Genetics |
| Phylogeny | 35984754 | Aestuariicella albida sp. nov., isolated from surface water of the Yellow Sea, and proposal of the genus Aestuariicella as a member of the family Cellvibrionaceae. | Xue HP, Li JY, Zhang DF, Zhang AH, Huang JK, Liu C, Zhao Z | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005493 | 2022 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Fatty Acids/chemistry, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry, *Water | Transcriptome |
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |