Name: Chitinophaga arvensicola JCM 2871
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 163570

Type strain:

Species: Chitinophaga arvensicola

Culture col. no.: JCM 2871, IAM 12653, IFO 16138, NBRC 16138

Strain history: H. Oyaizu 469 <-- K. Kato.

NCBI tax ID(s): 29529 (species)

SI-ID 62361

JCM 2871, IAM 12653, IFO 16138, NBRC 16138

Special Collections

Other strains from Chitinophaga arvensicola

Section

Chitinophaga arvensicola JCM 2871 is a bacterium that was isolated from Rhizosphere of cucumber root.

16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Chitinophaga*
	Species	**Chitinophaga arvensicola**
	Full Scientific Name (LPSN)	Chitinophaga arvensicola (Oyaizu et al. 1983) Kämpfer et al. 2006

Synonym

Cytophaga arvensicola

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Rhizosphere of cucumber root
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #124043]	Chitinophaga arvensicola gene for 16S rRNA, partial sequence, strain: NBRC 16138.	AB681052	1451	GenBank ENA	29529 tax ID	*

[Ref.: #67770]

GC-content

43.3 mol%

thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 2871, IAM 12653, IFO 16138, NBRC 16138

[Ref.: #114127]

SI-ID 62361

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#114127

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID62361.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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