Chitinophaga arvensicola (NBRC 16139, IFO 16139, IAM 12654)

Name: Chitinophaga arvensicola (NBRC 16139, IFO 16139, IAM 12654)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 163578

Type strain

Culture col. no. NBRC 16139 IFO 16139 IAM 12654 JCM 2872

NCBI tax ID(s) 29529

Special Collections JCM

History JCM <-- H. Oyaizu 474 <-- K. Kato.

Links

Chitinophaga arvensicola JCM 2872 is a bacterium that was isolated from Rhizosphere of cucumber root.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 62362

JCM 2872,IAM 12654,IFO 16139,NBRC 16139

@ref 20215

Last LPSN update 2026-05-29 08:45:12

Domain Bacteria

Phylum Bacteroidota

Class Chitinophagia

Order Chitinophagales

Family Chitinophagaceae

Genus Chitinophaga

Species Chitinophaga arvensicola

Full scientific name Chitinophaga arvensicola (Oyaizu et al. 1983) Kämpfer et al. 2006

Synonyms (1)

Cytophaga arvensicola

BacDive ID	Other strains from **Chitinophaga arvensicola** (7)	Type strain
17742	C. arvensicola M64, DSM 3695, ATCC 51264, IAM 12650, JCM ... (type strain)
163507	C. arvensicola JCM 2837, IAM 12646, IFO 16132, NBRC 16132
163508	C. arvensicola JCM 2838, IAM 12647, IFO 16133, NBRC 16133
163509	C. arvensicola JCM 2839, IAM 12648, IFO 16134, NBRC 16134
163564	C. arvensicola JCM 2869, IAM 12649, IFO 16135, NBRC 16135
163567	C. arvensicola JCM 2870, IAM 12651, IFO 16137, NBRC 16137
163570	C. arvensicola JCM 2871, IAM 12653, IFO 16138, NBRC 16138

Morphology

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Observation

67770

Observationquinones: MK-7

Isolation, sampling and environmental information

Isolation

67770

Sample typeRhizosphere of cucumber root

Interaction and safety

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
124043	Chitinophaga arvensicola gene for 16S rRNA, partial sequence, strain: NBRC 16139.	AB681053	1452		29529

GC content

@ref	GC-content (mol%)	Method
67770	45	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Literature

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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