Name: Bartonella alsatica DSM 21432
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 1634

Type strain:

Species: Bartonella alsatica

Culture col. no.: DSM 21432, CCUG 45774, CIP 105477, IBS 382

Strain history: CIP <- 1998, R. Heller, ULP, Strasbourg, France: strain IBS 382

NCBI tax ID(s): 1094551 (strain), 52764 (species)

SI-ID 67561

CIP 105477, CCUG 45774, DSM 21432

Special Collections

Section

Bartonella alsatica DSM 21432 is a microaerophile, Gram-negative, rod-shaped human pathogen that forms circular colonies and was isolated from blood of wild rabbit.

colony-forming
Gram-negative
rod-shaped
human pathogen
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Bartonellaceae*
	Genus	*Bartonella*
	Species	**Bartonella alsatica**
	Full Scientific Name (LPSN)	Bartonella alsatica Heller et al. 1999

Information on morphological and physiological properties Morphology

[Ref.: #23143]	Gram stain	negative
[Ref.: #116264]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %98.783

[Ref.: #23143]	Cell length	1-2 µm

[Ref.: #23143]	Cell width	0.5-0.8 µm

[Ref.: #23143]	Cell shape	rod-shaped
[Ref.: #116264]	Cell shape	rod-shaped

[Ref.: #116264]	Motility	no

[Ref.: #23143]	Colony size	>1.0 mm
[Ref.: #23143]	Colony color	white
[Ref.: #23143]	Colony shape	circular
[Ref.: #23143]	Incubation period	10 days
[Ref.: #23143]	Cultivation medium used	blood agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15703]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #15703]

Culture medium growth

[Ref.: #15703]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15703]

Culture medium composition

expand / minimize

[Ref.: #23143]

Culture medium

blood agar

[Ref.: #23143]

Culture medium growth

[Ref.: #38553]

Culture medium

MEDIUM 45 - for Columbia agar with sheep blood

[Ref.: #38553]

Culture medium growth

[Ref.: #38553]

Culture medium composition

expand / minimize

[Ref.: #116264]

Culture medium

CIP Medium 45

[Ref.: #116264]

Culture medium growth

[Ref.: #116264]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #15703]		growth	37 °C
[Ref.: #38553]		growth	37 °C
[Ref.: #116264]		growth	37-41 °C
[Ref.: #116264]	no	growth	10 °C
[Ref.: #116264]	no	growth	15 °C
[Ref.: #116264]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #15703]

Oxygen tolerance

microaerophile

[Ref.: #69480]

Ability of spore formation

no Confidence in %93.93

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23143]	4-nitrophenyl N-acetyl-beta-D-glucosaminide ChEBI	-	hydrolysis
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23143]	arginine ChEBI	+	other
[Ref.: #23143]	bis-4-nitrophenyl phosphate ChEBI	-	hydrolysis
[Ref.: #68371]	cellobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116264]	esculin ChEBI	-	hydrolysis
[Ref.: #68371]	esculin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23143]	glycine ChEBI	+	other
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23143]	leucine ChEBI	+	other
[Ref.: #23143]	lysine ChEBI	+	other
[Ref.: #68371]	maltose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23143]	methionine ChEBI	+	other
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #116264]	nitrate ChEBI	-	reduction
[Ref.: #116264]	nitrite ChEBI	-	reduction
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23143]	proline ChEBI	+	other
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	sucrose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23143]	trehalose ChEBI	-	builds acid from
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #23143]	tryptophan ChEBI	+	other
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #23143]		acetoin ChEBI	no
[Ref.: #116264]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #23143]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #116264]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	-	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #116264]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #23143]	catalase	-	1.11.1.6
[Ref.: #116264]	catalase	-	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #23143]	cytochrome oxidase	-	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #116264]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #116264]	gelatinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #116264]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116264]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #116264]	oxidase	-
[Ref.: #23143]	pyrazinamidase	-	3.5.1.B15
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #116264]	tryptophan deaminase	-
[Ref.: #23143]	urease	-	3.5.1.5
[Ref.: #116264]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #116264]	10091	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116264]	8730	-	-	-	+	-	+	-	-	+	-	-	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23143]	Sample type/isolated from	blood of wild rabbit
[Ref.: #23143]	Geographic location (country and/or sea, region)	Alsace, the region in the eastern part of France near the Rhine river
[Ref.: #23143]	Country	France
[Ref.: #23143]	Country ISO 3 Code	FRA
[Ref.: #23143]	Continent	Europe

[Ref.: #56916]	Sample type/isolated from	Rabbit blood

[Ref.: #15703]	Sample type/isolated from	rabbit blood

[Ref.: #116264]	Sample type/isolated from	Animal, Rabbit, blood
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Leporidae (Rabbit/Hare)
#Host Body Product	#Fluids	#Blood

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15703]	Pathogenicity (human)	yes
[Ref.: #15703]	Pathogenicity (animal)	yes
[Ref.: #15703]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #116264]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15703]	Bartonella alsatica 16S ribosomal RNA gene	AJ002139	1440	GenBank ENA	52764 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bartonella alsatica CIP 105477	GCA_013388295	complete	GenBank ENA	52764 tax ID	*
[Ref.: #66792]	Bartonella alsatica IBS 382T/CIP 105477	GCA_902728125	contig	GenBank ENA	52764 tax ID	*
[Ref.: #66792]	Bartonella alsatica strain CIP 105477	52764.3	complete	PATRIC	52764 tax ID	*
[Ref.: #66792]	Bartonella alsatica strain IBS 382T/CIP 105477	52764.4	wgs	PATRIC	52764 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bartonella alsatica CIP 105477 NCBI: GCA_013388295.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.783	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	88.972	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	83.782	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.93	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.051	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	88.877	no

Availability in culture collections External links

[Ref.: #15703]

Culture collection no.

DSM 21432, CCUG 45774, CIP 105477, IBS 382

[Ref.: #71281]

SI-ID 67561

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete Genome Sequence of Bartonella alsatica Strain IBS 382 (CIP 105477).	Thibau A, Schultze TG, Ballhorn W, Kempf VAJ	Microbiol Resour Announc	10.1128/MRA.00769-20	2020	*
Phylogeny	Bartonella alsatica sp. nov., a new Bartonella species isolated from the blood of wild rabbits.	Heller R, Kubina M, Mariet P, Riegel P, Delacour G, Dehio C, Lamarque F, Kasten R, Boulouis HJ, Monteil H, Chomel B, Piemont Y	Int J Syst Bacteriol	10.1099/00207713-49-1-283	1999	*

References

#15703

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21432

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23143

Rémy Heller, Maryline Kubina, Philippe Mariet, Philippe Riegel, Gilles Delacour, Christoph Dehio, Francois Lamarque, Rick Kasten, Henri-Jean Boulouis, Henri Monteil, Bruno Chomel, Yves Piémont: Bartonella alsatica sp. nov., a new Bartonella species isolated from the blood of wild rabbits. IJSEM 49: 283 - 288 1999 ( DOI 10.1099/00207713-49-1-283 , PubMed 10028274 )

#38553 ; Curators of the CIP;
#56916 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 45774

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#71281

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID67561.1 )

#116264 Collection of Institut Pasteur ; Curators of the CIP; CIP 105477
* These data were automatically processed and therefore are not curated

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Bartonella alsatica CIP 105477

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