Name: Halococcus agarilyticus JCM 19592
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162564

Type strain:

Species: Halococcus agarilyticus

Culture col. no.: JCM 19592, KCTC 4143

Strain history: H. Minegishi 62E.

NCBI tax ID(s): 1232219 (species)

Special Collections

JCM
KCTC

Section

Halococcus agarilyticus JCM 19592 is an archaeon that was isolated from Solar salt in the Philippines.

16S sequence
Archaea

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halococcaceae*
	Genus	*Halococcus*
	Species	**Halococcus agarilyticus**
	Full Scientific Name (LPSN)	Halococcus agarilyticus Minegishi et al. 2015

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	42 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Solar salt in the Philippines
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence AB748562 (>99% sequence identity) for Halococcus from Microbeatlas

Aquatic Samples	165
Soil Samples	25
Animal Samples	43
Plant Samples
Total Samples	233

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halococcus agarilyticus gene for 16S rRNA, partial sequence, strain: 62E	AB748562	1474	GenBank ENA	1232219 tax ID

[Ref.: #67770]

GC-content

63 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19592, KCTC 4143

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halococcus agarilyticus sp. nov., an agar-degrading haloarchaeon isolated from commercial salt.	Minegishi H, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Usami R	Int J Syst Evol Microbiol	10.1099/ijs.0.000151	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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