General

@ref: 67770

BacDive-ID: 162564

keywords: 16S sequence, Archaea

description: Halococcus agarilyticus JCM 19592 is an archaeon that was isolated from Solar salt in the Philippines.

NCBI tax id

• NCBI tax id: 1232219
• Matching level: species

strain history

• @ref: 67770
• history: H. Minegishi 62E.

doi: 10.13145/bacdive162564.20240510.9

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/archaea
• keyword: phylum/methanobacteriota
• domain: Archaea
• phylum: Methanobacteriota
• class: Halobacteria
• order: Halobacteriales
• family: Halococcaceae
• genus: Halococcus
• species: Halococcus agarilyticus
• full scientific name: Halococcus agarilyticus Minegishi et al. 2015

@ref: 67770

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Halococcaceae

genus: Halococcus

species: Halococcus agarilyticus

full scientific name: Halococcus agarilyticus Minegishi et al. 2015

type strain: yes

Culture and growth conditions

culture temp

• @ref: 67770
• growth: positive
• type: growth
• temperature: 42

Isolation, sampling and environmental information

isolation

• @ref: 67770
• sample type: Solar salt in the Philippines

taxonmaps

• @ref: 69479
• File name: preview.99_187215.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17821;96_68868;97_89515;98_121796;99_187215&stattab=map
• Last taxonomy: Halococcus
• 16S sequence: AB748562
• Sequence Identity:
• Total samples: 233
• soil counts: 25
• aquatic counts: 165
• animal counts: 43

Sequence information

16S sequences

• @ref: 67770
• description: Halococcus agarilyticus gene for 16S rRNA, partial sequence, strain: 62E
• accession: AB748562
• length: 1474
• database: nuccore
• NCBI tax ID: 1232219

GC content

• @ref: 67770
• GC-content: 63
• method: high performance liquid chromatography (HPLC)

External links

@ref: 67770

culture collection no.: JCM 19592, KCTC 4143

literature

• topic: Phylogeny
• Pubmed-ID: 25721723
• title: Halococcus agarilyticus sp. nov., an agar-degrading haloarchaeon isolated from commercial salt.
• authors: Minegishi H, Echigo A, Shimane Y, Kamekura M, Itoh T, Ohkuma M, Usami R
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijs.0.000151
• year: 2015
• mesh: Agar, Base Composition, DNA, Archaeal/genetics, Genes, Archaeal, Glycolipids/chemistry, Halococcus/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylglycerols/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride
• topic2: Genetics

Reference