Name: Algibacter lectus JCM 19300
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162471

Type strain:

Species: Algibacter lectus

Culture col. no.: JCM 19300

Strain history: T. Sawabe SS8.

NCBI tax ID(s): 221126 (species)

Other strains from Algibacter lectus

A. lectus M-3Alg 15-1, DSM 15365, KCTC 12103, ... (type strain)
A. lectus JCM 19274

Section

Algibacter lectus JCM 19300 is a mesophilic, Gram-negative bacterium that has a yellow pigmentation and was isolated from Coastal sediment.

Gram-negative
pigmented
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Algibacter*
	Species	**Algibacter lectus**
	Full Scientific Name (LPSN)	Algibacter lectus Nedashkovskaya et al. 2004

Synonym

Algibacter wandonensis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.961

[Ref.: #67770]	Pigment production	yes
[Ref.: #67770]	Pigmentation color	yellow
[Ref.: #67770]	Pigment name	zeaxanthin

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.979
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Metabolite production	Metabolite	Production
[Ref.: #67770]		zeaxanthin ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Coastal sediment
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hakodate
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Algibacter lectus JCM 19300	GCA_000764755	contig	GenBank	221126 tax ID
[Ref.: #66792]	Algibacter lectus JCM 19300	221126.3	wgs	PATRIC	221126 tax ID	*
[Ref.: #66792]	Algibacter lectus JCM 19300	2609460214	draft	JGI IMG/M	221126 tax ID	*

[Ref.: #67770]

GC-content

33.3 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Algibacter lectus JCM 19300 PATRIC: 221126.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Algibacter lectus JCM 19300 PATRIC: 221126.3
[Ref.: #69480]	motile	no	86.349	no
[Ref.: #69480]	gram-positive	no	98.159	no
[Ref.: #69480]	anaerobic	no	99.718	no
[Ref.: #69480]	aerobic	yes	93.326	no
[Ref.: #69480]	halophile	no	69.837	no
[Ref.: #69480]	spore-forming	no	96.61	no
[Ref.: #69480]	glucose-util	yes	89.262	no
[Ref.: #69480]	flagellated	no	93.493	no
[Ref.: #69480]	thermophile	no	99.426	yes
[Ref.: #69480]	glucose-ferment	no	88.599	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19300

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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