Name: Algibacter lectus JCM 19300
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162471

Type strain:

Species: Algibacter lectus

Culture col. no.: JCM 19300

Strain history: T. Sawabe SS8.

NCBI tax ID(s): 221126 (species)

Special Collections

Other strains from Algibacter lectus

Section

When using BacDive for research please cite our paper

Algibacter lectus JCM 19300 is a mesophilic bacterium that has a yellow pigmentation and was isolated from Coastal sediment.

pigmented
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Algibacter*
	Species	**Algibacter lectus**
	Full Scientific Name (LPSN)	Algibacter lectus Nedashkovskaya et al. 2004

Synonym

Algibacter wandonensis

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %98.981
[Ref.: #125439]	Gram stain	negative Confidence in %99.5

[Ref.: #125438]	Motility	no Confidence in %93

[Ref.: #67770]	Pigment production	yes
[Ref.: #67770]	Pigmentation color	yellow
[Ref.: #67770]	Pigment name	zeaxanthin

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

obligate aerobe Confidence in %93.1

[Ref.: #125438]	Ability of spore formation	no Confidence in %90.795
[Ref.: #125439]	Ability of spore formation	no Confidence in %99.1

	Metabolite production	Metabolite	Production
[Ref.: #67770]		zeaxanthin ChEBI	yes

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Coastal sediment
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hakodate
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Algibacter lectus JCM 19300	GCA_000764755	contig	GenBank ENA	221126 tax ID
[Ref.: #66792]	Algibacter lectus JCM 19300	221126.3	wgs	PATRIC	221126 tax ID	*
[Ref.: #66792]	Algibacter lectus JCM 19300	2609460214	draft	JGI IMG/M	221126 tax ID	*

[Ref.: #67770]

GC-content

33.3 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Algibacter lectus JCM 19300 PATRIC: 221126.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	98.981	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	97.72	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	90.795	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	89.956	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	no	93	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Algibacter lectus JCM 19300 NCBI: GCA_000764755
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.1
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	67.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.5
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	93.1

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19300

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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