Cite this strain

Algibacter lectus (JCM 19274)

Name: Algibacter lectus (JCM 19274)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162458

Type strain

Culture col. no. JCM 19274

NCBI tax ID(s) 221126

Special Collections JCM

History T. Sawabe NR4.

Links

Algibacter lectus JCM 19274 is a mesophilic prokaryote that has a yellow pigmentation and was isolated from Rock surface.

pigmented mesophilic genome sequence

Name and taxonomic classification

SI-ID 132974

JCM 19274

@ref 20215

Last LPSN update 2026-02-09 11:39:24

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Algibacter

Species Algibacter lectus

Full scientific name Algibacter lectus Nedashkovskaya et al. 2004

Synonyms (1)

Algibacter wandonensis

BacDive ID	Other strains from **Algibacter lectus** (2)	Type strain
5480	A. lectus M-3Alg 15-1, DSM 15365, KCTC 12103, KMM 3902, ... (type strain)
162471	A. lectus JCM 19300

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	92.5
125438	98.981	negative
125439	99.8	negative

Pigmentation

@ref	Production	Color	Name
67770		yellow	zeaxanthin

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.06
125439	obligate aerobe	95

Spore formation

@ref	Spore formation	Confidence
125438		90.67
125439		99.2

Metabolite production

@ref	Chebi-ID	Metabolite	Production
67770	27547 ChEBI	zeaxanthin

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
67770	Rock surface	Hakodate	Japan	JPN	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM76483v1 assembly for Algibacter lectus JCM 19274	contig	GCA_000764835	221126.4	2636415480	221126	41.28

GC content

@ref	GC-content (mol%)	Method
67770	33.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Algibacter lectus JCM 19274
NCBI: GCA_000764835

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.20	no
125439	motility	BacteriaNetⓘ	no	62.90	no
125439	gram_stain	BacteriaNetⓘ	negative	99.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Algibacter lectus JCM 19274
PATRIC: 221126.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.98	no
125438	anaerobic	anaerobicⓘ	no	97.64	no
125438	spore-forming	spore-formingⓘ	no	90.67	no
125438	aerobic	aerobicⓘ	yes	90.06	no
125438	thermophilic	thermophileⓘ	no	98.00	no
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

Title	Authors	Journal	DOI	Year
Draft Genome Sequences of Marine Flavobacterium Algibacter lectus Strains SS8 and NR4.	Takatani N, Nakanishi M, Meirelles P, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hosokawa M, Miyashita K, Thompson FL, Niwa A, Sawabe T, Sawabe T.	Genome Announc	10.1128/genomea.01168-14	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Algibacter lectus (JCM 19274)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite production

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000764835

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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