Strain identifier
BacDive ID: 162471
Type strain: 
Species: Algibacter lectus
Strain history: T. Sawabe SS8.
NCBI tax ID(s): 221126 (species)
version 9.2 (current version)
General
@ref: 67770
BacDive-ID: 162471
keywords: genome sequence, Bacteria, mesophilic, Gram-negative, pigmented
description: Algibacter lectus JCM 19300 is a mesophilic, Gram-negative bacterium that has a yellow pigmentation and was isolated from Coastal sediment.
NCBI tax id
- NCBI tax id: 221126
- Matching level: species
strain history
- @ref: 67770
- history: T. Sawabe SS8.
doi: 10.13145/bacdive162471.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Algibacter
- species: Algibacter lectus
- full scientific name: Algibacter lectus Nedashkovskaya et al. 2004
synonyms
- @ref: 20215
- synonym: Algibacter wandonensis
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Algibacter
species: Algibacter lectus
full scientific name: Algibacter lectus Nedashkovskaya et al. 2004
type strain: no
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | negative | 98.981 | |
| 69480 | 93 | no |
pigmentation
- @ref: 67770
- production: yes
- color: yellow
- name: zeaxanthin
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 90.795 |
| 69481 | no | 100 |
metabolite production
- @ref: 67770
- Chebi-ID: 27547
- metabolite: zeaxanthin
- production: yes
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Coastal sediment
- geographic location: Hakodate
- country: Japan
- origin.country: JPN
- continent: Asia
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Algibacter lectus JCM 19300 | 221126.3 | wgs | patric | 221126 |
| 66792 | Algibacter lectus JCM 19300 | 2609460214 | draft | img | 221126 |
| 67770 | Algibacter lectus JCM 19300 | GCA_000764755 | contig | ncbi | 221126 |
GC content
- @ref: 67770
- GC-content: 33.3
- method: genome sequence analysis
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.981 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.72 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 90.795 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 89.956 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 98 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 93 | no |
External links
@ref: 67770
culture collection no.: JCM 19300
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |