Name: Gilvimarinus polysaccharolyticus JCM 19198
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162427

Type strain:

Species: Gilvimarinus polysaccharolyticus

Culture col. no.: JCM 19198, KCTC 32438

Strain history: H. Cheng and M. Wu YN3.

NCBI tax ID(s): 863921 (species)

Special Collections

JCM
KCTC

Section

Gilvimarinus polysaccharolyticus JCM 19198 is a Gram-negative bacterium that was isolated from Seaweed from the coast of Weihai.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Cellvibrionales*
	Family	*Cellvibrionaceae*
	Genus	*Gilvimarinus*
	Species	**Gilvimarinus polysaccharolyticus**
	Full Scientific Name (LPSN)	Gilvimarinus polysaccharolyticus Cheng et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %93.678
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Seaweed from the coast of Weihai
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence HM437226 (>99% sequence identity) for Gilvimarinus polysaccharolyticus subclade from Microbeatlas

Aquatic Samples	38
Soil Samples	6
Animal Samples	2
Plant Samples	1
Total Samples	47

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gilvimarinus polysaccharolyticus strain YN3 16S ribosomal RNA gene, partial sequence	HM437226	1503	GenBank ENA	863921 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gilvimarinus polysaccharolyticus YN3	GCA_001187555	scaffold	GenBank ENA	863921 tax ID

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gilvimarinus polysaccharolyticus YN3 NCBI: GCA_001187555.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gilvimarinus polysaccharolyticus YN3 NCBI: GCA_001187555.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	92.27	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	75.374	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.678	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.257	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	73.475	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19198, KCTC 32438

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Gilvimarinus polysaccharolyticus sp. nov., an agar-digesting bacterium isolated from seaweed, and emended description of the genus Gilvimarinus.	Cheng H, Zhang S, Huo YY, Jiang XW, Zhang XQ, Pan J, Zhu XF, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.065078-0	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Gilvimarinus polysaccharolyticus YN3

Gilvimarinus polysaccharolyticus YN3

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