Strain identifier
BacDive ID: 162427
Type strain: 
Species: Gilvimarinus polysaccharolyticus
Strain history: H. Cheng and M. Wu YN3.
NCBI tax ID(s): 863921 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 162427
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Gilvimarinus polysaccharolyticus JCM 19198 is a Gram-negative bacterium that was isolated from Seaweed from the coast of Weihai.
NCBI tax id
- NCBI tax id: 863921
- Matching level: species
strain history
- @ref: 67770
- history: H. Cheng and M. Wu YN3.
doi: 10.13145/bacdive162427.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Cellvibrionales
- family: Cellvibrionaceae
- genus: Gilvimarinus
- species: Gilvimarinus polysaccharolyticus
- full scientific name: Gilvimarinus polysaccharolyticus Cheng et al. 2015
@ref: 67770
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Cellvibrionales
family: Cellvibrionaceae
genus: Gilvimarinus
species: Gilvimarinus polysaccharolyticus
full scientific name: Gilvimarinus polysaccharolyticus Cheng et al. 2015
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69480 | no | 93.678 |
| 69481 | no | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Seaweed from the coast of Weihai
- country: China
- origin.country: CHN
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_59989.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_235;96_1661;97_1988;98_42625;99_59989&stattab=map
- Last taxonomy: Gilvimarinus polysaccharolyticus subclade
- 16S sequence: HM437226
- Sequence Identity:
- Total samples: 47
- soil counts: 6
- aquatic counts: 38
- animal counts: 2
- plant counts: 1
Sequence information
16S sequences
- @ref: 67770
- description: Gilvimarinus polysaccharolyticus strain YN3 16S ribosomal RNA gene, partial sequence
- accession: HM437226
- length: 1503
- database: nuccore
- NCBI tax ID: 863921
Genome sequences
- @ref: 67770
- description: Gilvimarinus polysaccharolyticus YN3
- accession: GCA_001187555
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 863921
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69481 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 100 | no |
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 92.27 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 75.374 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93.678 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.257 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 73.475 | no |
External links
@ref: 67770
culture collection no.: JCM 19198, KCTC 32438
literature
- topic: Phylogeny
- Pubmed-ID: 25392347
- title: Gilvimarinus polysaccharolyticus sp. nov., an agar-digesting bacterium isolated from seaweed, and emended description of the genus Gilvimarinus.
- authors: Cheng H, Zhang S, Huo YY, Jiang XW, Zhang XQ, Pan J, Zhu XF, Wu M
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.065078-0
- year: 2014
- mesh: Agar/*metabolism, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Glycolipids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seaweed/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |