Name: Geomicrobium sp. JCM 19037
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162372

Type strain:

Species: Geomicrobium sp.

Culture col. no.: JCM 19037

Strain history: T. Kudo F309.

NCBI tax ID(s): 1460634 (species)

Other strains from Geomicrobium sp.

G. sp. JCM 19038
G. sp. JCM 19039
G. sp. JCM 19055

Section

Geomicrobium sp. JCM 19037 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from Sword-tail newt .

Gram-positive
spore-forming
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Geomicrobium*
	Full Scientific Name (LPSN)	Geomicrobium Echigo et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	yes Confidence in %99.447
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Sword-tail newt (Cynops ensicauda popei)
[Ref.: #67770]	Host species	Cynops ensicauda popei
[Ref.: #67770]	Geographic location (country and/or sea, region)	main island of Okinawa
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Geomicrobium sp. JCM 19037	GCA_000698105	contig	GenBank	1460634 tax ID
[Ref.: #66792]	Geomicrobium sp. JCM 19037	1460634.3	wgs	PATRIC	1460634 tax ID	*
[Ref.: #66792]	Geomicrobium sp. JCM 19037	2609460133	draft	JGI IMG/M	1460634 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Geomicrobium sp. JCM 19037 PATRIC: 1460634.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Geomicrobium sp. JCM 19037 PATRIC: 1460634.3
[Ref.: #69480]	motile	yes	81.772	no
[Ref.: #69480]	gram-positive	yes	85.374	no
[Ref.: #69480]	anaerobic	no	98.521	no
[Ref.: #69480]	halophile	yes	87.357	no
[Ref.: #69480]	spore-forming	yes	90.272	no
[Ref.: #69480]	thermophile	no	98.92	yes
[Ref.: #69480]	glucose-util	yes	87.99	no
[Ref.: #69480]	aerobic	yes	95.003	no
[Ref.: #69480]	flagellated	no	50	no
[Ref.: #69480]	glucose-ferment	no	91.167	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 19037

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft Genome Sequences of Geomicrobium sp. Strains JCM 19037, JCM 19038, JCM 19039, and JCM 19055, Isolated from Aquatic Samples.	Kudo T, Nakahara T, Zhang X, Taniyama S, Arakawa O, Murase S, Nakata H, Oshima K, Suda W, Kitamura K, Iida T, Oshida Y, Inoue T, Hongoh Y, Hattori M, Ohkuma M	Genome Announc	10.1128/genomeA.00622-14	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Geomicrobium sp. in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF