Name: Halococcus sediminicola JCM 18965
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162356

Type strain:

Species: Halococcus sediminicola

Culture col. no.: JCM 18965, CECT 8275

Strain history: S. W. Roh; Korea Basic Sci. Inst., South Korea; CBA1101.

NCBI tax ID(s): 1264579 (species)

SI-ID 394018

CECT 8275, JCM 18965

Special Collections

Section

Halococcus sediminicola JCM 18965 is a Gram-negative archaeon that was isolated from Marine sediment from the bay of Gangjin.

Gram-negative
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Halobacteriales*
	Family	*Halococcaceae*
	Genus	*Halococcus*
	Species	**Halococcus sediminicola**
	Full Scientific Name (LPSN)	Halococcus sediminicola Yim et al. 2014

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Marine sediment from the bay of Gangjin
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JX989265 (>99% sequence identity) for Halococcus sediminicola from Microbeatlas

Aquatic Samples	1
Soil Samples
Animal Samples
Plant Samples
Total Samples	1

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halococcus sediminicola strain CBA1101 from South Korea 16S ribosomal RNA gene, partial sequence	JX989265	1406	GenBank ENA	1264579 tax ID
[Ref.: #124043]	Halococcus sediminicola gene for 16S ribosomal RNA, partial sequence, strain: JCM 18965.	AB935407	1474	GenBank ENA	1264579 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halococcus sediminicola CBA1101	GCA_000755245	contig	GenBank ENA	1264579 tax ID

[Ref.: #67770]

GC-content

66 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halococcus sediminicola CBA1101 NCBI: GCA_000755245.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	71.576	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	85.744	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	83.043	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	82.124	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	86.532	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.5	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18965, CECT 8275

[Ref.: #113493]

SI-ID 394018

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Halococcus sediminicola sp. nov., an extremely halophilic archaeon isolated from a marine sediment.	Yim KJ, Cha IT, Whon TW, Lee HW, Song HS, Kim KN, Nam YD, Lee SJ, Bae JW, Rhee SK, Choi JS, Seo MJ, Roh SW, Kim D	Antonie Van Leeuwenhoek	10.1007/s10482-013-0054-7	2013	*
Genetics	Draft genome sequence of the extremely halophilic archaeon Halococcus sediminicola CBA1101(T) isolated from a marine sediment sample.	Yim KJ, Kim BY, Lee HW, Song HS, Nam YD, Choi JS, Choi HJ, Seo MJ, Yoon C, Kim KN, Kim D, Rhee JK, Roh SW	Mar Genomics	10.1016/j.margen.2014.10.003	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#113493

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID394018.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

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Halococcus sediminicola CBA1101

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