Name: Halorubrum halophilum JCM 18963
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162355

Type strain:

Species: Halorubrum halophilum

Culture col. no.: JCM 18963, CECT 8278

Strain history: S. W. Roh B8.

NCBI tax ID(s): 413816 (species)

SI-ID 394014

CECT 8278, JCM 18963

Section

Halorubrum halophilum JCM 18963 is a mesophilic archaeon that was isolated from Salt-fermented seafood made from shrimp.

mesophilic
16S sequence
Archaea
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Archaea"
	Phylum	*Methanobacteriota*
	Class	*Halobacteria*
	Order	*Haloferacales*
	Family	*Halorubraceae*
	Genus	*Halorubrum*
	Species	**Halorubrum halophilum**
	Full Scientific Name (LPSN)	Halorubrum halophilum Yim et al. 2014

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	37 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Salt-fermented seafood made from shrimp
* marker position based on {}

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halorubrum halophilum strain B8 16S ribosomal RNA gene, partial sequence	EF077637	1430	ENA	413816 tax ID
[Ref.: #67770]	Halorubrum halophilum strain B8 16S ribosomal RNA gene, partial sequence	KF848217	1450	ENA	413816 tax ID
[Ref.: #67770]	Halorubrum halophilum strain B8 16S ribosomal RNA gene, partial sequence	KF848218	1450	ENA	413816 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Halorubrum halophilum B8	GCA_000739595	contig	GenBank	413816 tax ID

[Ref.: #67770]

GC-content

64.6 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Halorubrum halophilum B8 NCBI: GCA_000739595.1
[Ref.: #69480]	motile	no	73.196	no
[Ref.: #69480]	flagellated	no	95.643	no
[Ref.: #69480]	gram-positive	no	97.754	no
[Ref.: #69480]	anaerobic	no	96.415	no
[Ref.: #69480]	aerobic	yes	89.687	no
[Ref.: #69480]	halophile	yes	87.738	no
[Ref.: #69480]	spore-forming	no	93.334	no
[Ref.: #69480]	thermophile	no	94.716	yes
[Ref.: #69480]	glucose-util	yes	88.351	no
[Ref.: #69480]	glucose-ferment	no	84.586	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18963, CECT 8278

[Ref.: #113492]

SI-ID 394014

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence of Halorubrum halophilum B8(T), an extremely halophilic archaeon isolated from salt-fermented seafood.	Lee HW, Yim KJ, Song HS, Nam YD, Choi HJ, Seo MJ, Kim KN, Kim D, Roh SW, Rhee JK	Mar Genomics	10.1016/j.margen.2014.08.005	2014	*
Phylogeny	Halorubrum halophilum sp. nov., an extremely halophilic archaeon isolated from a salt-fermented seafood.	Yim KJ, Cha IT, Lee HW, Song HS, Kim KN, Lee SJ, Nam YD, Hyun DW, Bae JW, Rhee SK, Seo MJ, Choi JS, Choi HJ, Roh SW, Kim D	Antonie Van Leeuwenhoek	10.1007/s10482-014-0115-6	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#113492

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID394014.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Halorubrum halophilum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Halorubrum halophilum B8

Change proposal

Change proposal