Name: Spirosoma montaniterrae JCM 18492
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 162254

Type strain:

Species: Spirosoma montaniterrae

Culture col. no.: JCM 18492, KCTC 23999, KEMB 9004-162

Strain history: M. K. Kim DY10.

NCBI tax ID(s): 1178516 (species)

Special Collections

JCM
KCTC

Section

Spirosoma montaniterrae JCM 18492 is a Gram-negative bacterium that was isolated from Soil sample collected from Mt. Deogyusan.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Spirosomataceae*
	Genus	*Spirosoma*
	Species	**Spirosoma montaniterrae**
	Full Scientific Name (LPSN)	Spirosoma montaniterrae Lee et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %95.391

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-7

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Soil sample collected from Mt. Deogyusan
[Ref.: #67770]	Geographic location (country and/or sea, region)	Jeonbuk Province
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JQ958375 (>99% sequence identity) for Spirosoma montaniterrae subclade from Microbeatlas

Aquatic Samples	310
Soil Samples	29
Animal Samples	719
Plant Samples	15
Total Samples	1073

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Spirosoma montaniterrae strain DY10 16S ribosomal RNA gene, partial sequence	JQ958375	1452	GenBank ENA	1178516 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hymenobacter sp. DG5B	1411621.5	complete	PATRIC	1411621 tax ID	*

[Ref.: #67770]

GC-content

53 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Hymenobacter sp. DG5B PATRIC: 1411621.5
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	95.391	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.251	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	86.752	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.562	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.937	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	82.276	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 18492, KCTC 23999, KEMB 9004-162

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Spirosoma montaniterrae sp. nov., an ultraviolet and gamma radiation-resistant bacterium isolated from mountain soil.	Lee JJ, Kang MS, Joo ES, Kim MK, Im WT, Jung HY, Srinivasan S	J Microbiol	10.1007/s12275-015-5008-5	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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Search for species Spirosoma montaniterrae in external resources:
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PANGAEA
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Hymenobacter sp. DG5B

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