Strain identifier
BacDive ID: 162254
Type strain: 
Species: Spirosoma montaniterrae
Strain history: M. K. Kim DY10.
NCBI tax ID(s): 1178516 (species)
version 9.1 (current version)
General
@ref: 67770
BacDive-ID: 162254
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Spirosoma montaniterrae JCM 18492 is a Gram-negative bacterium that was isolated from Soil sample collected from Mt. Deogyusan.
NCBI tax id
- NCBI tax id: 1178516
- Matching level: species
strain history
- @ref: 67770
- history: M. K. Kim DY10.
doi: 10.13145/bacdive162254.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Spirosomataceae
- genus: Spirosoma
- species: Spirosoma montaniterrae
- full scientific name: Spirosoma montaniterrae Lee et al. 2017
@ref: 67770
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Spirosomaceae
genus: Spirosoma
species: Spirosoma montaniterrae
full scientific name: Spirosoma montaniterrae Lee et al. 2017
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 95.391
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
- @ref: 67770
- sample type: Soil sample collected from Mt. Deogyusan
- geographic location: Jeonbuk Province
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
taxonmaps
- @ref: 69479
- File name: preview.99_2526.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_148;96_1362;97_1616;98_1965;99_2526&stattab=map
- Last taxonomy: Spirosoma montaniterrae subclade
- 16S sequence: JQ958375
- Sequence Identity:
- Total samples: 1073
- soil counts: 29
- aquatic counts: 310
- animal counts: 719
- plant counts: 15
Sequence information
16S sequences
- @ref: 67770
- description: Spirosoma montaniterrae strain DY10 16S ribosomal RNA gene, partial sequence
- accession: JQ958375
- length: 1452
- database: nuccore
- NCBI tax ID: 1178516
Genome sequences
- @ref: 66792
- description: Hymenobacter sp. DG5B
- accession: 1411621.5
- assembly level: complete
- database: patric
- NCBI tax ID: 1411621
GC content
- @ref: 67770
- GC-content: 53
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 95.391 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.251 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 86.752 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 86.562 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.937 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 82.276 | no |
External links
@ref: 67770
culture collection no.: JCM 18492, KCTC 23999, KEMB 9004-162
literature
- topic: Phylogeny
- Pubmed-ID: 26115990
- title: Spirosoma montaniterrae sp. nov., an ultraviolet and gamma radiation-resistant bacterium isolated from mountain soil.
- authors: Lee JJ, Kang MS, Joo ES, Kim MK, Im WT, Jung HY, Srinivasan S
- journal: J Microbiol
- DOI: 10.1007/s12275-015-5008-5
- year: 2015
- mesh: Altitude, Bacterial Typing Techniques, Base Composition, Cytophagaceae/*classification/growth & development/*isolation & purification/radiation effects, DNA, Ribosomal/genetics, *Gamma Rays, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Radiation Tolerance, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, *Ultraviolet Rays, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Phenotype
Reference
| @id | authors | title | doi/url |
|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |