Pigmentiphaga soli (KEMB 9004-082, KCTC 23577, JCM 17666)

Name: Pigmentiphaga soli (KEMB 9004-082, KCTC 23577, JCM 17666)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 162073

Type strain

Culture col. no. KEMB 9004-082 KCTC 23577 JCM 17666

NCBI tax ID(s) 1007095

Special Collections JCM KCTC

History JCM <-- M. K. Kim BS12.

Links

Pigmentiphaga soli JCM 17666 is a bacterium that was isolated from Soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 286013

KCTC 23577,JCM 17666

@ref 20215

Last LPSN update 2026-05-29 08:44:50

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Alcaligenaceae

Genus Pigmentiphaga

Species Pigmentiphaga soli

Full scientific name Pigmentiphaga soli Lee et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.209

Culture and growth conditions

Culture temp

@ref	Growth	Type	Temperature (°C)
67770	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	99.707

Spore formation

@ref	Spore formation	Confidence
125439		99.354

Observation

67770

Observationquinones: Q-8

Isolation, sampling and environmental information

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
67770	Soil	Republic of Korea	KOR	Asia

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3954109v1 assembly for Pigmentiphaga soli JCM 17666	scaffold	GCA_039541095	1007095	62.91

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
67770	Pigmentiphaga soli strain BS12 16S ribosomal RNA gene, partial sequence	JF806521	1453		1007095

GC content

@ref	GC-content (mol%)	Method
67770	67.3	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3954109v1 assembly for Pigmentiphaga soli JCM 17666
NCBI: GCA_039541095

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.71	no
125439	motility	BacteriaNetⓘ	yes	86.42	no
125439	gram_stain	BacteriaNetⓘ	negative	99.21	no
125439	spore_formation	BacteriaNetⓘ	no	99.35	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pigmentiphaga soli sp. nov., a bacterium isolated from soil.	Lee JJ, Srinivasan S, Kim MK	J Microbiol	10.1007/s12275-011-1375-8	2011

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Pigmentiphaga soli (KEMB 9004-082, KCTC 23577, JCM 17666)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Isolation, sampling and environmental information

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_039541095

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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