Name: Tessaracoccus defluvii JCM 17540
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 162034

Type strain:

Species: Tessaracoccus defluvii

Culture col. no.: JCM 17540, KEMB 5401-076

Strain history: S.-S. Lee; KEMB, Kyonggi Univ., South Korea; LNB-140.

NCBI tax ID(s): 1285901 (species)

Section

Tessaracoccus defluvii JCM 17540 is a mesophilic, Gram-positive bacterium that was isolated from Aeration tank in a sewage treatment plant.

Gram-positive
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Propionibacteriaceae*
	Genus	*Tessaracoccus*
	Species	**Tessaracoccus defluvii**
	Full Scientific Name (LPSN)	Tessaracoccus defluvii Srinivasan et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #67770]			growth	28 °C

[Ref.: #67770]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %99.955
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Aeration tank in a sewage treatment plant
[Ref.: #67770]	Geographic location (country and/or sea, region)	near Gwacheon
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence KC295452 (>99% sequence identity) for Tessaracoccus defluvii subclade from Microbeatlas

Aquatic Samples	1054
Soil Samples	3
Animal Samples	87
Plant Samples	15
Total Samples	1159

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Tessaracoccus defluvii strain LNB-140 16S ribosomal RNA gene, partial sequence	KC295452	1460	ENA	1285901 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Tessaracoccus defluvii JCM 17540	GCA_014489575	complete	GenBank	1285901 tax ID	*
[Ref.: #66792]	Tessaracoccus defluvii strain JCM 17540	1285901.3	complete	PATRIC	1285901 tax ID	*
[Ref.: #66792]	Tessaracoccus defluvii JCM 17540	2897428245	complete	JGI IMG/M	1285901 tax ID	*

[Ref.: #67770]

GC-content

67.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Tessaracoccus defluvii JCM 17540 NCBI: GCA_014489575.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Tessaracoccus defluvii JCM 17540 NCBI: GCA_014489575.1
[Ref.: #69480]	flagellated	no	97.894	no
[Ref.: #69480]	gram-positive	yes	86.132	no
[Ref.: #69480]	anaerobic	no	96.078	no
[Ref.: #69480]	aerobic	yes	61.229	no
[Ref.: #69480]	halophile	no	90.744	no
[Ref.: #69480]	spore-forming	no	87.433	no
[Ref.: #69480]	thermophile	no	97.033	no
[Ref.: #69480]	glucose-util	yes	90.399	no
[Ref.: #69480]	motile	no	90.988	no
[Ref.: #69480]	glucose-ferment	yes	50.726	no

Availability in culture collections External links

[Ref.: #67770]

Culture collection no.

JCM 17540, KEMB 5401-076

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Tessaracoccus defluvii sp. nov., isolated from an aeration tank of a sewage treatment plant.	Srinivasan S, Sundararaman A, Lee SS	Antonie Van Leeuwenhoek	10.1007/s10482-016-0766-6	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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